PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G274800.1.p
Common NameGLYMA_15G274800, LOC100792574
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 723aa    MW: 77740.2 Da    PI: 6.0839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G274800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07302322526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.15G274800.1.p 302 PCPDFRK-GACRRGDMCEYAHG 322
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.11E-1639164IPR020683Ankyrin repeat-containing domain
PfamPF127968.7E-1080151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00584114IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.204.0E-1784163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.41484185IPR020683Ankyrin repeat-containing domain
CDDcd002045.81E-1484162No hitNo description
PRINTSPR014159.1E-585100IPR002110Ankyrin repeat
PROSITE profilePS5008812.342119154IPR002110Ankyrin repeat
SMARTSM002489.8E-5119151IPR002110Ankyrin repeat
PRINTSPR014159.1E-5138152IPR002110Ankyrin repeat
SMARTSM003564.0E-6297323IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5302322IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035635332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MCGGPEKSKS LSTPSSSAVE GSTNGKDMNK LTVHAADSFS CLLELASNND FEDFKLALVR  60
DVSLISEVGL WYVRQIGSKQ IVLEHRTPLM VAAMYGSIDV LKLILSCPET DVNFSCGTDK  120
STALHCAASG GSVNAVDIVK LLLSAGADIS CVDANGNRPV DVIVVPPKLE GLKATLEDLL  180
SDTASDGSIG ECFIPISGNS SCSDSAAHLS PPENGLPSSP MASKFTDAAV NSVSEKKEYP  240
IDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTSCNRRVCF FAHTAEELRP  360
LYVSTGSAVP SPRSSASTPN VMDMAAAMSL FPGSPSSISS MSPSPFAQPM SPSTSGISHS  420
SNAWPQPNVP ALHLPGSNIQ TSRLRSSLSA RDMPPEDLDV LQDFDGQQHL LNDLGCFSQP  480
HPGGISVSRS GRSKTLTPSN LDELFSAEIS SSPRYSDPAV ASVFSPTHKS AIMNQFQQLQ  540
SSLSPINTSV LSPRNVEHPL FQASFGVSSP GRMSPRSMEP ISPMSSRLSF AQREKQHQQL  600
RSLSSRDLGA NIPVSMVGSP VNSWSNWGSP HGNGKVDWSV NGNELGRLHR SSSFELGNNG  660
EEPDLSWVQS LVKESPSEIK ELGGSGPVAF ADGPSSNPQV ESVDHSVLGA WLEQMQLDQL  720
VV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.253420.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G274800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352240.0AC235224.1 Glycine max strain Williams 82 clone GM_WBb0024G20, complete sequence.
GenBankAC2353020.0AC235302.1 Glycine max strain Williams 82 clone GM_WBb0063H09, complete sequence.
GenBankAC2353750.0AC235375.1 Glycine max strain Williams 82 clone GM_WBb0107H17, complete sequence.
GenBankAC2354020.0AC235402.1 Glycine max strain Williams 82 clone GM_WBb0123O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598269.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLI1MJP70.0I1MJP7_SOYBN; Uncharacterized protein
STRINGGLYMA15G43030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]