PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G272400.1.p
Common NameGLYMA_15G272400, LOC100787817
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 364aa    MW: 40754.1 Da    PI: 7.014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G272400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                         -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                         k++lC+ffa  G C  G+ C F+H+
  Glyma.15G272400.1.p  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                         99****6666.*************5 PP
2zf-CCCH27.45.7e-093454526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C f+++ G C yG+rC++ H+
  Glyma.15G272400.1.p 34 ICTFYQK-GVCAYGSRCRYDHV 54
                         7******.*************7 PP
3zf-CCCH18.43.9e-06146166526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ fa+ G C++G++C+ +Hg
  Glyma.15G272400.1.p 146 ICS-FAAAGNCPRGEKCPHIHG 166
                          677.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6152956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53253IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.549141168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4146166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578508.01E-13202274No hitNo description
Gene3DG3DSA:3.30.40.102.1E-9203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00129209269No hitNo description
PROSITE profilePS5008911.958210268IPR001841Zinc finger, RING-type
PfamPF000976.2E-7210267IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001845.4E-6210267IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.732297326IPR000571Zinc finger, CCCH-type
SMARTSM003560.019297325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GVCAYGSRCR YDHVKASREQ  60
SSAPSSSVTE PQTPVSDTVA FGNTRATFNG VATAAEFSLS RSPYFLPSEP AWNQEPVWNQ  120
EFGYNEPLGE DNVGQTIITS PSELSICSFA AAGNCPRGEK CPHIHGDLCP TCGKHCLHPF  180
RPEEREEHMK SCENKHKHLD ALKRSQEIEC SVCLELVLSK PTAAECKFGL LSECDHPFCI  240
SCIRNWRSSN PTLGMDVNST LRACPICRKL SYFVIPSVIW YSTTEEKQEI IDNYKAKLKS  300
IDCKHFDFGE GNCPFGTSCF YKHAYRDGRL EQVVLRHLGA ADGDTVIAKD IRLSDFLSNM  360
HLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.180400.0root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G272400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546878.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X1
RefseqXP_028203616.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-176C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0B2PE730.0A0A0B2PE73_GLYSO; Putative RING-type E3 ubiquitin transferase C3H69 isoform A
TrEMBLI1MJM50.0I1MJM5_SOYBN; Uncharacterized protein
STRINGGLYMA15G42750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-160C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]