PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G227300.1.p
Common NameGLYMA_15G227300, LOC100801593
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 300aa    MW: 32904.4 Da    PI: 4.7841
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G227300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.31.9e-196861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl d+v r
  Glyma.15G227300.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSR 86
                         5789**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-26372IPR009072Histone-fold
SuperFamilySSF471131.15E-204101IPR009072Histone-fold
PfamPF008082.4E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY GHGHGHAEAG PDDRVITKRR KAIGDDGNDS  120
DEEAKRSKML ELGHTGSTGR GRGRGRGRGR GRGRPPLNRE TYHQDAESEP CTSVQPSNPQ  180
NTNTSIAMDN GSESKEIPKE ENIAAPVVPV VSTDSLRNID LNAITNENDD KKASAEADAS  240
ASVPEPDASL PEPPTESKHE EIPGWSLSDV DKMAIDSLQL AQLGRPLEEE EEDYDEEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-20272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143152RGRGRGRGRG
2143153RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.209530.0cotyledon| leaf| root| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G227300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0946380.0BT094638.1 Soybean clone JCVI-FLGm-18N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350906.10.0class 2 transcription repressor NC2 alpha 6
RefseqXP_028204343.10.0dr1-associated corepressor-like isoform X2
TrEMBLA0A445GX680.0A0A445GX68_GLYSO; Dr1-associated corepressor
TrEMBLI1MIK60.0I1MIK6_SOYBN; Uncharacterized protein
STRINGGLYMA15G36170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-75nuclear factor Y, subunit C11