PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G213300.1.p
Common NameGLYMA_15G213300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 556aa    MW: 62759.1 Da    PI: 4.6503
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G213300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.51.9e-1091765451374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetseknsseelaalklfsevs 88 
                          lv+ Ll+cAeav  +d+++a+ lL+r+  lasp+gd++qR+  +f+++L+ rl+   +++  +a  ++ + +  + +++l a++l+++++
  Glyma.15G213300.1.p 176 LVHMLLACAEAVGCRDNQQAELLLSRIWALASPSGDSLQRVSYCFAKGLKCRLSLLPHNVIaNATlSSMDVPFITRENKLEAFQLLYQTT 265
                          689**************************************************993333330332133333333499999********** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P++ f++++aN+aI +a +g++ +Hi+D+++++ lQW +L++aL+sRpegpp+lRiTg+  +e  ++ +l++  + L + A++lg+++ef
  Glyma.15G213300.1.p 266 PYIAFGFMAANEAICQASQGKSSIHIVDLGMEHTLQWSSLIRALSSRPEGPPTLRITGLTGNE--ENSKLQASMNVLVEEASSLGMHLEF 353
                          *************************************************************55..99*********************** PP

                 GRAS 179 nvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          +++ ++ +   l++e+L+++++Eal Vn++lqlh+ ++es    +   e+L  +k+l P+ ++vveq+++hn++ Fl rfle+l+yysa+
  Glyma.15G213300.1.p 354 HIISEHlTPCLLTMEKLNLRKEEALCVNSILQLHKYVKESRGYLK---EILLSIKKLGPTALTVVEQDTNHNGPFFLGRFLESLHYYSAI 440
                          **7444466788*************************88877777...9***************************************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fdslea++ r+s++r+k+Er  +++ei+nvva eg +r+erhe++ +Wr++l++aGF+ +pl+   ++q++++l+ ++ dgy++  e+g 
  Glyma.15G213300.1.p 441 FDSLEASMTRNSQHRMKIERLHFAEEIQNVVAYEGPDRIERHERVDQWRRQLGRAGFQVMPLK--CTSQVRMMLSVYDCDGYTLSYEKGN 528
                          **************************************************************7..679********************** PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+lgWk+rp++++SaW+
  Glyma.15G213300.1.p 529 LLLGWKGRPVMMASAWQ 545
                          ****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.756150527IPR005202Transcription factor GRAS
PfamPF035146.7E-107176545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MKGINRWLSF YMDESVNHDF AIRRYCPARM EQEQGGDKCQ DQEALVFYDT ELCSSDATSS  60
TPCLASSEVD DFVDSFINMD QYEYVNEDQG FQEKHRSFDH FVVNDEDEAD AYSIVNGVFE  120
YVPTTLEDSE LEIYEDVTTA MLEEEVAMNG SFCAIPEFVV PCTQEANLGV DQGLDLVHML  180
LACAEAVGCR DNQQAELLLS RIWALASPSG DSLQRVSYCF AKGLKCRLSL LPHNVIANAT  240
LSSMDVPFIT RENKLEAFQL LYQTTPYIAF GFMAANEAIC QASQGKSSIH IVDLGMEHTL  300
QWSSLIRALS SRPEGPPTLR ITGLTGNEEN SKLQASMNVL VEEASSLGMH LEFHIISEHL  360
TPCLLTMEKL NLRKEEALCV NSILQLHKYV KESRGYLKEI LLSIKKLGPT ALTVVEQDTN  420
HNGPFFLGRF LESLHYYSAI FDSLEASMTR NSQHRMKIER LHFAEEIQNV VAYEGPDRIE  480
RHERVDQWRR QLGRAGFQVM PLKCTSQVRM MLSVYDCDGY TLSYEKGNLL LGWKGRPVMM  540
ASAWQVASSY LTRIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6618354426378Protein SCARECROW
5b3h_A6e-6618354425377Protein SCARECROW
5b3h_D6e-6618354425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G213300.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545708.10.0DELLA protein RGL1
TrEMBLA0A0R0G4D40.0A0A0R0G4D4_SOYBN; Uncharacterized protein
STRINGGLYMA15G28410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132512730
Representative plantOGRP70521119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-76RGA-like 1