PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G181000.1.p
Common NameGLYMA_15G181000, LOC100815277
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1123aa    MW: 125284 Da    PI: 6.6435
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G181000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F 
  Glyma.15G181000.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI 213
                          99*****************************954.4444.48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l++++ r+
  Glyma.15G181000.1.p 214 --RDEKQQLLLGIKRA 227
                          ..55788889988775 PP
2Auxin_resp121.37.4e-40252334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaas++s+F+++YnPras+seFv++ +k++kal+++ s+GmRf+m+fete+s  rr++Gt++g++d+dpvrW+nS+Wr+L+
  Glyma.15G181000.1.p 252 AAHAASNNSPFTIFYNPRASPSEFVIPSAKYNKALYNHASLGMRFRMMFETEESGVRRYMGTITGITDVDPVRWKNSQWRNLQ 334
                          79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41118241IPR015300DNA-binding pseudobarrel domain
CDDcd100178.81E-20125217No hitNo description
SMARTSM010191.7E-23126228IPR003340B3 DNA binding domain
PfamPF023624.8E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.182126228IPR003340B3 DNA binding domain
PfamPF065076.1E-35252334IPR010525Auxin response factor
PfamPF023094.4E-99921081IPR033389AUX/IAA domain
PROSITE profilePS5174524.7559951088IPR000270PB1 domain
SuperFamilySSF542771.5E-810091073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1123 aa     Download sequence    Send to blast
MKAPPSGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYDKEAIL ASDMGLKQNQ  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAASNNS PFTIFYNPRA SPSEFVIPSA KYNKALYNHA SLGMRFRMMF  300
ETEESGVRRY MGTITGITDV DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFPKEPGMP DDESDIENAF KRAMPWLGDD LGMKDASSSV FPGFSLMQWM  420
SMQQNNQFSA AQSGFIPPSM LSSNALHGNL TTDDPSKLLS FQAPVLSSPN LQFNKPNLAN  480
QVNQLQQSPT SWPPQQQQQQ QKLQSMLQTP LNPLQQQQQQ RQQQLPVPQN LSQPQQQQPQ  540
MPQQRAQQPQ QQQQQSCQQT IMSNGTVASN QIPNQCVQQP VTYSQLQQQQ LLSGSIPPQQ  600
SFQSPNKNAL LMTSLPQDSQ FQQQIDQQAS LLQRQQQQQT QLQSSPLQLL QQSLSQRASQ  660
QPQMTQMCQQ NSSEQQPQLQ LLQKLQQQQQ QQQQQQQQQL LSTSSPLLQS QLLHQQNTHQ  720
QNQQLPQLPL SQGHQPQQLG NNAFSMEKLL NGNNYSTSSL MQTQQLSVNQ PHNTQKSLTN  780
TRAPSTLTDG DAPSCSTSPS TNNCQISPNL MKRNQHVPAT LGGPSVLEPT NHLMQGLHSK  840
SEMQIKHELP SVRGTDQLKF KGTVADQMEA SSGTSYCIDP NNIHQNFPLP NFCMDGDVQS  900
NPRNNLPFAS NLDGLTPDTF LSRGYDSQKD LQNLLSNYGG APRDIETELS TAALSPQPFG  960
VPGIPFKPGC SSDIAINDPG VLNNGLWANQ TQRMRTYTKV QKCGSVGRCI DVTRYKGYDE  1020
LRHDLARMFG IEGQLEDPQR TEWKLVYVDH ENDILLVGDD PWEEFVSCVQ SIKILSSAEV  1080
QKMSLDGDLG HVPVPNQACS GTDNGNAWRG QYEDNSAASF NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.515830.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G181000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546519.10.0auxin response factor 19
TrEMBLK7MC630.0K7MC63_SOYBN; Auxin response factor
STRINGGLYMA15G19980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Representative plantOGRP9033914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19