PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G173300.4.p
Common NameGLYMA_15G173300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 181aa    MW: 19826.3 Da    PI: 10.4058
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G173300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.93.4e-332278158
            CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                         d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Glyma.15G173300.4.p 22 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 78
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.9E-372081IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.8572181IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.1E-252446IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-282478IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068602646IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.1E-255578IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVPQMLGLAS TRVALPLDLA EDGPIYVNAK QYHGILRRRQ SRAKLEAQNK LIKSRKPYLH  60
ESRHRHALNR VRGSGGRFLS TKQLAQSNAE FVTGAHSGSD PTNIYQKEHP LEVESHSSKD  120
GDNASFITTY SDRPCLSGNN LNFRQQECMF LGNSANMSGA PQCSGGLTFG GAKQRTSVVR  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-242283263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G173300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993700.0BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617459.11e-121nuclear transcription factor Y subunit A-9 isoform X1
RefseqXP_028248029.11e-121nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A0B2R9L81e-131A0A0B2R9L8_GLYSO; Nuclear transcription factor Y subunit A-5 (Fragment)
TrEMBLA0A0R0G2C91e-131A0A0R0G2C9_SOYBN; Uncharacterized protein
TrEMBLA0A445GUX21e-130A0A445GUX2_GLYSO; Nuclear transcription factor Y subunit A-5
STRINGGLYMA15G18970.11e-131(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-39nuclear factor Y, subunit A5