PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G141300.1.p | ||||||||
Common Name | GLYMA_15G141300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 418aa MW: 47767.2 Da PI: 5.0247 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 163.7 | 1.6e-50 | 143 | 377 | 34 | 284 |
GRAS 34 dg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevsPilkfshltaNqaIleavegeervHii 115 +g +p++R+++yf+eAL+ r+ r + + +++++ ++ s + l a k+ f+e P+ ++s +t q I e v++++++H+i Glyma.15G141300.1.p 143 AGtSPVRRIVHYFAEALRLRMDRATGR----VSCKDLQKGPSFDPLEAAKVlnptvvaFYEELPFCQISVFTEVQDIIEDVAEAKKIHVI 228 55479******************3333....334444433344444444444445568******************************** PP GRAS 116 DfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203 D++i++G+QW L+qaL sR e p l+iT++ + esg + e tgerL+++A+ ++ pf+fn+++++++ l+ + ++++p+E++a Glyma.15G141300.1.p 229 DLEIKKGGQWTILMQALESRHECPIeLLKITAITAVESGtTRYIAEDTGERLKDYAQGMNRPFSFNIVMVSDMLHLREDLFEIDPEETIA 318 *********************7665499*******999977778899******************************************* PP GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 V + + +++lsP v+vv+e ea+hns+sF++rf+eal ++sa+fd+le+ + re er++ Glyma.15G141300.1.p 319 VYSLV----------------------IRTLSPSVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLETCMKREVAERNT 377 *8876......................899*****************************************9999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 21.158 | 79 | 417 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-48 | 143 | 377 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MEDLYHVSFT TDANFSSSND ILWCTEELNE LRKVQFSRAE DHGDYGGIDP LYSNFGFFPD 60 DPSTNHQKYH QQLQPSYHDY GKFDDNLQFD MPHSNSTTPL ASLEILNNYG KGFKRLRNDD 120 VAMATTNEGI WRKLSIEDVM RIAGTSPVRR IVHYFAEALR LRMDRATGRV SCKDLQKGPS 180 FDPLEAAKVL NPTVVAFYEE LPFCQISVFT EVQDIIEDVA EAKKIHVIDL EIKKGGQWTI 240 LMQALESRHE CPIELLKITA ITAVESGTTR YIAEDTGERL KDYAQGMNRP FSFNIVMVSD 300 MLHLREDLFE IDPEETIAVY SLVIRTLSPS VMVVAEIEAN HNSTSFVNRF IEALFFFSAF 360 FDCLETCMKR EVAERNTRNL KVDVWRAFLS RFGMNGHCLL IGWKGTPINS VSVWKFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 9e-23 | 147 | 385 | 39 | 286 | GRAS family transcription factor containing protein, expressed |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G141300.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028180248.1 | 1e-157 | DELLA protein RGL2-like | ||||
TrEMBL | K7MBA5 | 0.0 | K7MBA5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G15105.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 | Representative plant | OGRP2520 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-24 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G141300.1.p |