PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.15G125400.2.p

Common Name

GLYMA_15G125400

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 455aa MW: 51795.4 Da PI: 8.0687

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.15G125400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.6	6.7e-21	61	144	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH l Glyma.15G125400.2.p 61 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 144 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-18	61	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-28	263	356	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY 60 NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM 120 IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL 180 VIDAGGNGNS NSCAREDITF SEFSNKWNLR KGDTQAIYNF LCRMQLTNPN FFYLMDFNDD 240 GHLRNAFWVD ARSRAACGYF GDVIYFDNTN LSNKFEIPLV TFVGINHHGQ SVLLGCGLLA 300 SETTESYLWL LRTWVKCMSG CSPQTIITDR CKALQSAIVE IFPRSHHCFG LSLIMKKVPE 360 KLGGLHNYDA IRKALIKAVY DTLKVIEFEA AWGFMIQCFG VSDHEWLRSL YEDRVRWAPV 420 YLKGTFFAGM SAARPGSTRK NLFQILNQGA QAHC*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY  60
NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM  120
IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL  180
VIDAGGNGNS NSCAREDITF SEFSNKWNLR KGDTQAIYNF LCRMQLTNPN FFYLMDFNDD  240
GHLRNAFWVD ARSRAACGYF GDVIYFDNTN LSNKFEIPLV TFVGINHHGQ SVLLGCGLLA  300
SETTESYLWL LRTWVKCMSG CSPQTIITDR CKALQSAIVE IFPRSHHCFG LSLIMKKVPE  360
KLGGLHNYDA IRKALIKAVY DTLKVIEFEA AWGFMIQCFG VSDHEWLRSL YEDRVRWAPV  420
YLKGTFFAGM SAARPGSTRK NLFQILNQGA QAHC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.15G125400.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025981560.1	0.0	uncharacterized protein LOC100796448
Refseq	XP_028204299.1	0.0	uncharacterized protein LOC114388164
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0R0FZZ6	0.0	A0A0R0FZZ6_SOYBN; Uncharacterized protein
STRING	GLYMA15G13150.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Glyma.15G125400.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]