PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G125400.1.p | ||||||||
Common Name | GLYMA_15G125400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 669aa MW: 77215.3 Da PI: 7.314 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.7 | 1.2e-20 | 61 | 144 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + + r+etrtgC a++++++ ++++w+v ++ leHnH l Glyma.15G125400.1.p 61 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHML 144 5899***************************************9988.....999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.4E-18 | 61 | 144 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-28 | 263 | 356 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.6E-4 | 539 | 582 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.644 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MEESSLCCEQ LPDGECIEVQ KDEEDDGLIE LDCQNGFPEG RKEFVAPAVG MEFESYDDAY 60 NYYICYAKEV GFRVRVKNSW FKRNSREKYG AVLCCSSQGF KRIKDVNHLR KETRTGCPAM 120 IRMRLVESQR WRVLEVMLEH NHMLGAKILR SVKKMGNGTK RKPLPSSDAE GQTIKLYRAL 180 VIDAGGNGNS NSCAREDITF SEFSNKWNLR KGDTQAIYNF LCRMQLTNPN FFYLMDFNDD 240 GHLRNAFWVD ARSRAACGYF GDVIYFDNTN LSNKFEIPLV TFVGINHHGQ SVLLGCGLLA 300 SETTESYLWL LRTWVKCMSG CSPQTIITDR CKALQSAIVE IFPRSHHCFG LSLIMKKVPE 360 KLGGLHNYDA IRKALIKAVY DTLKVIEFEA AWGFMIQCFG VSDHEWLRSL YEDRVRWAPV 420 YLKGTFFAGM SAARPGESIS PFFDRYVHKQ TPLKEFLDKY ELALHRKHKE ESFSDIESRS 480 SSPLLKTRCS FELQLSRMYT REMFMKFQLE VEEVYSCFGT TQLHVDGPII IFLVKERVLI 540 EGNRREIRDF EVLYSRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI PHKYILSRWK 600 KDFKRLYVPD HSSGGVNDTD RIQWSNQLFR SALQVVEEGI LSLDHYNVAL QSLEESLSKV 660 HDVEQRQE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G125400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981560.1 | 0.0 | uncharacterized protein LOC100796448 | ||||
Refseq | XP_028204299.1 | 0.0 | uncharacterized protein LOC114388164 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A445GSQ8 | 0.0 | A0A445GSQ8_GLYSO; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | I1MFY3 | 0.0 | I1MFY3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G13150.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G125400.1.p |
Publications ? help Back to Top | |||
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