PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G095500.1.p
Common NameGLYMA_15G095500, LOC100812433
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 485aa    MW: 50851.9 Da    PI: 8.2663
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-125075227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG+C +G+rC+F+H++
  Glyma.15G095500.1.p 50 DEVDCTYYLRTGFCGFGSRCRFNHPR 75
                         6789********************96 PP
2zf-CCCH35.41.8e-1196120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++++rt tCk+G++Ck++H++
  Glyma.15G095500.1.p  96 QPVCQYYMRTRTCKFGSSCKYHHPR 120
                          689********************96 PP
3zf-CCCH36.39.4e-12142166226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C+++ +tG+Ck+G++CkF+H+
  Glyma.15G095500.1.p 142 GEKECSYYVKTGQCKFGATCKFHHP 166
                          7899********************9 PP
4zf-CCCH28.23.4e-09356378426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + C ++a+ G Ck+G+ CkF H 
  Glyma.15G095500.1.p 356 PACIHYAQHGVCKFGSACKFDHH 378
                          57********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6524876IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65077IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-493120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.75693121IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-996120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-498120IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718140168IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4146165IPR000571Zinc finger, CCCH-type
SMARTSM003560.19352379IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042352380IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-7356378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5357382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEQYGRSSEG SRSDPSPEWA GPEAQTGLEE PMWQLGMGGA GEESYPQRPD EVDCTYYLRT  60
GFCGFGSRCR FNHPRDRAAV AGAERTTGEY PERVGQPVCQ YYMRTRTCKF GSSCKYHHPR  120
QAGGTAATPM SLSYYGYPLR PGEKECSYYV KTGQCKFGAT CKFHHPVPAG VQIPAPSPVA  180
PSPLPVPVPS PLYSTMQPPP GPSSQQIGVL VARPPMLPGS LVQSPYGPVV LSPAMVPISG  240
WGPYQASATG AVHPSGTPSN VGSPQLYGIT QLPSPVAAYP GPYQPSGSPV GPSSSSQKEQ  300
AFPERSNQPE YQYYPKTGEV KFGPSYRYNP PPDMSAPKAN VILSPAGLPL RPGAAPACIH  360
YAQHGVCKFG SACKFDHHMG SLSYSPSASS LADMPVAPYP VGSTISTLAP SSSSSELRPE  420
LTSGSSKESV PSRMSSSTLT GSIGLTLSTG GPISQSSTQP PSQSSGPLAT VISTTSSNVS  480
PTST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-128AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597530.10.0zinc finger CCCH domain-containing protein 34
RefseqXP_028204341.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-142C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A445GRE90.0A0A445GRE9_GLYSO; Zinc finger CCCH domain-containing protein 58 isoform A
TrEMBLI1MF450.0I1MF45_SOYBN; Uncharacterized protein
STRINGGLYMA15G10230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-123C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]