PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G077100.1.p
Common NameGLYMA_15G077100, Glyma15g08370.1, LOC100803173
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 220aa    MW: 23669.3 Da    PI: 9.7464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G077100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-202271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp    k++r++lg+f+taeeAa+a++aa+++++g
  Glyma.15G077100.1.p 22 HFRGVRKRP-WGRFAAEIRDPA---KKTRVWLGTFDTAEEAARAYDAAAREFRG 71
                         69*******.**********83...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1052279IPR001471AP2/ERF domain
SMARTSM003801.4E-392285IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-232280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-332279IPR001471AP2/ERF domain
PfamPF008473.6E-142271IPR001471AP2/ERF domain
CDDcd000181.94E-182279No hitNo description
PRINTSPR003673.8E-112334IPR001471AP2/ERF domain
PRINTSPR003673.8E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MAPRDKTSAV KPSGNAGVKD LHFRGVRKRP WGRFAAEIRD PAKKTRVWLG TFDTAEEAAR  60
AYDAAAREFR GPKAKTNFPL PSENFKNASP SQSSTVESSS RDRDVAADSS PLDLNLAPVA  120
VSSARFPFRN QFPVFPGAVP AANQVMYFDA VLRAGMAGPR GFAFGYNPHP VAASEYHATT  180
SDSDSSSVID LNHNEGVVKG NGSRMFDLDL NHPPPHEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221980264ATERF1
3gcc_A2e-221980264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.318840.0epicotyl| hypocotyl| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, in cultured cells and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:12654868, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G077100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemical transient expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Not influenced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310890.0KT031089.1 Glycine max clone HN_CCL_207 AP2-EREBP transcription factor (Glyma15g08370.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545997.11e-158ethylene-responsive transcription factor 4
SwissprotQ404771e-44ERF4_TOBAC; Ethylene-responsive transcription factor 4
TrEMBLI1MEL91e-157I1MEL9_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA15G08370.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-25erf domain protein 9
Publications ? help Back to Top
  1. Ogata T, et al.
    Involvement of NtERF3 in the cell death signalling pathway mediated by SIPK/WIPK and WRKY1 in tobacco plants.
    Plant Biol (Stuttg), 2015. 17(5): p. 962-72
    [PMID:25996234]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]