PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G076800.1.p
Common NameGLYMA_15G076800, LOC100819734
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 882aa    MW: 99577.5 Da    PI: 4.1266
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G076800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08396415525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C+ffa+ G+C +G++C+F H
  Glyma.15G076800.1.p 396 ICDFFAK-GWCIRGSSCSFLH 415
                          7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.615391418IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-6391415IPR000571Zinc finger, CCCH-type
SMARTSM003560.002392417IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6396415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MSIPDSPFAE DVEIDPSLDD DDEEEEETEE EEEEEEEVEE EEVEEEEEVE EEEVEEEEVE  60
EELEEEEVEE IEVEEELEEE EVEEIEVEEE LEEEVVEEIE VEEEEEEGEQ GEEQQVEEME  120
EEEEEEVEEE EEEEEVEEEE EEEQEQQQQE AVEEKKEEQQ QQHQAEAAME EQEEVPMEEK  180
EEDKPAVPGS PLDADKDRKD YGQHMEFEGQ DKNLGPVSSV AENPEVMPPS STHCMEENNV  240
MLKKSDIPTL KKEELPLKYE ISSHPKSREN LTSVEVCRSQ GLDVEVENAG SLLQKKTFRG  300
YCVPGCNSKA NLCGDNNIDS RARATKSSSD TVQDMVIGPL PRDCLVEDSN GGQNSRNKIM  360
LSEMESRDDA KQMTSRTRNL SPSAEIKDGN KRPRIICDFF AKGWCIRGSS CSFLHIKDTG  420
DNTDQEAEAD SVSTYQKRQL KVEEGVRENV ERSRMNEQEA TPSWHPSQEK QKFPPRDNLF  480
PDNRFPFSAS DNYLSPNLSL NSTCADGMAT PRNQHMYKGY TSTLLSHSPN SSLVTQFAAS  540
SMSLSHRILA QSGRSLPFSS SLGASNVDSL KFLNTDKEYL TSKSTFSGSG REDFSLVSSS  600
RVPSYPAGYK SKICSYDWEP SVPFRPSFFI TSMNVSSPGD LYDPLRDSIE IPNIGDGSLK  660
ASLLIHGSNV QVSSQVRTYG DSAVVGEHMS NLNDDKSSVS SHNKFCENEP NKNCLPHEKD  720
CLPPETEITS GTYQGKMGMG QHTFGVADST KNERDVTECD ARRHGEGSGH KKKRVDRDKK  780
NHEMDVDFQI DGSIQKESKA LKFFRAALVD HVKELLKPAW HEGHLSKDAH IMIVKKSVDK  840
VVSTLEPHQI PIMDTAKQYV SSSQVKIAKL VNGYVNKYGK Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.289320.0epicotyl| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G076800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981752.10.0protein FRIGIDA-ESSENTIAL 1
RefseqXP_025981753.10.0protein FRIGIDA-ESSENTIAL 1
TrEMBLK7MA730.0K7MA73_SOYBN; Uncharacterized protein
STRINGGLYMA15G08331.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108052733
Representative plantOGRP728179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-45C3H family protein