PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G059600.1.p
Common NameGLYMA_15G059600, LOC100808145
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28846 Da    PI: 9.4761
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G059600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.5e-271059251
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
  Glyma.15G059600.1.p 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
                         8***********************************************86 PP
2K-box86.55.4e-2981171999
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          + +++a+ +q+e+a L+++++ Lq+ +R+l+Ge+L  L +keLq+Le+qLe slk +R kK+++l+++ieel++k + +++en +L +k+
  Glyma.15G059600.1.p  81 NPASEAKFWQTEAASLRQQLQYLQECHRQLMGEELMGLGIKELQSLENQLEMSLKGVRMKKDQILTNEIEELRQKGNLIHQENVELYQKM 170
                          457889**********************************************************************************98 PP

                K-box  99 e 99 
                          e
  Glyma.15G059600.1.p 171 E 171
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-40160IPR002100Transcription factor, MADS-box
CDDcd002658.83E-46277No hitNo description
SuperFamilySSF554557.59E-33290IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.9E-2784170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.93586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST  60
SMKSVIERYN KLKEEHHHLM NPASEAKFWQ TEAASLRQQL QYLQECHRQL MGEELMGLGI  120
KELQSLENQL EMSLKGVRMK KDQILTNEIE ELRQKGNLIH QENVELYQKM EQIQKENAEL  180
QKKVYEARST NEENVASNPS YKVRNGYDLH APISLQLSQP QPQYSEPSAK AIKLGYPLKL  240
IYQVYNFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-23181181MEF2C
5f28_B8e-23181181MEF2C
5f28_C8e-23181181MEF2C
5f28_D8e-23181181MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.642630.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G059600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968100.0BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028204324.10.0MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP491e-100MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0G6770.0A0A0R0G677_SOYBN; Uncharacterized protein
TrEMBLA0A445GPR00.0A0A445GPR0_GLYSO; MADS-box transcription factor 27
STRINGGLYMA13G32810.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF8912560
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-94AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]