PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G058000.1.p | ||||||||
Common Name | GLYMA_15G058000, LOC100779995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24588.4 Da PI: 10.1759 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.4 | 5.1e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskR+ g++KKA ELS LCd e+a+i+fs+ gkl++y+s Glyma.15G058000.1.p 9 KKIDNVTARQVTFSKRKSGLFKKARELSLLCDSEIALIVFSPGGKLFDYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 41.8 | 4.7e-15 | 87 | 171 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e+l+ ++a L+ke re R+l Ge+L+ L l+eLq+Le++L +sl+++ + K e ++++i+ l++k ++l e+n+ ++++++ Glyma.15G058000.1.p 87 EQLRCNYADLNKEFGDRIREMRQLNGEELQGLALRELQKLEERLVSSLNRVYKAKVENFTREIDILKQKGNKLMEDNRLMKQRIK 171 566677888888887777888*********************************************************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.609 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-29 | 3 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.03E-36 | 3 | 69 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-13 | 86 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.799 | 86 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVRRKIPIKK IDNVTARQVT FSKRKSGLFK KARELSLLCD SEIALIVFSP GGKLFDYASS 60 SMQKVIERHI LWSELNLEKL DQSCPTEQLR CNYADLNKEF GDRIREMRQL NGEELQGLAL 120 RELQKLEERL VSSLNRVYKA KVENFTREID ILKQKGNKLM EDNRLMKQRI KPRNEICSVQ 180 RHEHEQGRSF DTSLTLGLSF PAGSKYRVSE Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 4e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 4e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 4e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 5e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 5e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 5e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 5e-20 | 1 | 74 | 1 | 74 | MEF2 CHIMERA |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9646 | 0.0 | flower| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G058000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-53 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547095.1 | 1e-154 | MADS-box protein JOINTLESS | ||||
Refseq | XP_006597365.1 | 1e-154 | MADS-box protein JOINTLESS | ||||
Swissprot | Q9FUY6 | 7e-54 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | K7M9U6 | 1e-153 | K7M9U6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G06314.1 | 1e-153 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26660 | 2 | 3 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-55 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G058000.1.p |
Entrez Gene | 100779995 |
Publications ? help Back to Top | |||
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