PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G044800.1.p | ||||||||
Common Name | GLYMA_15G044800, LOC100795408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31372 Da PI: 7.6728 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 3e-39 | 24 | 84 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdst tkfCyynnyslsqPryfCk+C+ryWtkGG+lrnvPvGgg+rk+++ss Glyma.15G044800.1.p 24 PEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNVPVGGGCRKKRSSS 84 6899*****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 22 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-33 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDPSNGQPQQ MSSQSVEKKP KPHPEQALKC PRCDSTSTKF CYYNNYSLSQ PRYFCKSCKR 60 YWTKGGTLRN VPVGGGCRKK RSSSKRAQDQ TFTPNLNPLT ALPHLSYDSN DLTLALARFQ 120 KQSSGQLGYN DHDLSIMGNP TTGSFCDILG NSGMNPSSEN PSFLDEFQTG FLQTQNHLQN 180 LYCVYGNGDL GEVDNGNSGG VGVSGEMMLP YDQVVMSNAT AQSVSVMKQE MCSGREQSER 240 RVLGGFPWQI NADTNIIGEL DSGKAIASWN SFTNSWHGLL QSPLM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28678 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G044800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857261 | 0.0 | DQ857261.1 Glycine max Dof11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547515.1 | 0.0 | dof zinc finger protein DOF5.3 | ||||
Refseq | XP_028202861.1 | 0.0 | dof zinc finger protein DOF5.3-like | ||||
TrEMBL | A0A445GPA6 | 0.0 | A0A445GPA6_GLYSO; Dof zinc finger protein DOF2.1 | ||||
TrEMBL | K7M9L0 | 0.0 | K7M9L0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G04980.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5026 | 30 | 51 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28510.1 | 4e-41 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G044800.1.p |
Entrez Gene | 100795408 |