PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G039600.1.p | ||||||||
Common Name | GLYMA_15G039600, LOC100779632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 220aa MW: 24907.9 Da PI: 7.8429 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.4e-20 | 24 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+++++ r+ps+e++++++++l ++ ++V++WFqN++a++++ Glyma.15G039600.1.p 24 SRWSPTKEQIDMLENFYKQgIRTPSTEQIQQITSRLraygYIEGKNVFYWFQNHKARQRQ 83 6*****************99*******************99*****************97 PP | |||||||
2 | Wus_type_Homeobox | 110.4 | 1e-35 | 23 | 84 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt+eQi +Le+ yk+G+rtP++e+iq+it++L++yG ie+kNVfyWFQN+kaR+rqk Glyma.15G039600.1.p 23 VSRWSPTKEQIDMLENFYKQGIRTPSTEQIQQITSRLRAYGYIEGKNVFYWFQNHKARQRQK 84 68***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.159 | 19 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-6 | 21 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.46E-12 | 23 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-9 | 24 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-17 | 24 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.16E-6 | 25 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MESHSTAEDE SGWKGSSGAH SSVSRWSPTK EQIDMLENFY KQGIRTPSTE QIQQITSRLR 60 AYGYIEGKNV FYWFQNHKAR QRQKLKQKQQ SIAYCNCFLH ASHPICQNVV CAPYCLQKSG 120 FSFYPHQPKV LASVGISSRI ETGSFGMLRI CDGMQSEHPD YNYSTSNREA LTLFPLHPTG 180 ILEEKTTHHS VDVTDKSFVS IAVDENGHLG NQPCFNFQY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39436 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G039600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096510 | 0.0 | BT096510.1 Soybean clone JCVI-FLGm-15H19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547375.1 | 1e-167 | uncharacterized protein LOC100779632 | ||||
TrEMBL | I1MDG5 | 1e-165 | I1MDG5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G04460.1 | 1e-166 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 | Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-33 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G039600.1.p |
Entrez Gene | 100779632 |