PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G036900.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 675aa    MW: 75602.7 Da    PI: 5.5619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G036900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.89.8e-1113086723374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+s d+++a+ lL+++++++s  gd +qRla+yf+++L++rla    ++ + +p + t+   s++ l+a+kl++  sP+ +
  Glyma.15G036900.1.p 308 TLLTQCAQAVASFDQRNANDLLSQIRQHSSAFGDGLQRLAHYFANGLETRLAA---GTPSYMPLEGTT---SADMLKAYKLYVTSSPLQR 391
                          69**************************************************9...555556666666...89***************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          +++ +a q+ l  ve+e  vHiiDf+i +G+QWp+L+++L++R +gpp+lRiTg++ p++g   +e++eetg+rLa+++++++vpfe+n 
  Glyma.15G036900.1.p 392 LTNYLATQTFL--VENEGSVHIIDFGICYGFQWPCLIKKLSERHGGPPRLRITGIELPQPGfrPAERVEETGRRLANYCKKFNVPFEYNC 479
                          *********98..89999******************************************9***************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           +a+++e+++l +L+++++E+++V++ ++l++l+de+v+++s+rd+vLkl++ ++P+++++   +  ++++ Fl+rf eal+++s+lfd+
  Glyma.15G036900.1.p 480 -LAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVEVKSPRDAVLKLIRMINPNMFIHGVVNGTYSAPFFLTRFREALYHFSSLFDM 568
                          .6**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          +ea++pre+ er+++E+ l+gr++ nv+acegaer+er et+++W+ r ++aGFk+v+++ + ++  k +++k + + + v e+ ++++l
  Glyma.15G036900.1.p 569 FEANVPREDPERVMLEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQVRFDPQLVNHEKEMVKKEYHKDFVVAEDGKWVLL 658
                          *************************************************************************99888************ PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gWk+r L ++SaW+
  Glyma.15G036900.1.p 659 GWKGRILNAISAWT 672
                          *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.23280652IPR005202Transcription factor GRAS
PfamPF035143.4E-108308672IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNSLVQNFSG PITEFSNQNQ VEKGFDFEFD DSSSSLSSGA SSGGESTEVT KYSNQILRYI  60
SDILMDEEDD LERKPCMLQE CLRLQAAEKS FHDALLHQPS SRFRDESVSI TDSDENYGRN  120
ASFESNGSCT TDNSCESVLV NGVGEFDSSF LQLQTPLVDS PHDPSGESPG VGFFHDPFVK  180
SQAAGYFHDG TWNLFQSQSQ TKKPLMVEEG FSASAPREKR SHGMDDYAFH EQEGRRGSKV  240
SAVFSDESES PEILDEVLLC QSGRSQSLLC AAAEPSQSVN LGGSNGKGTR SRSKKVSTKA  300
GTAVDLWTLL TQCAQAVASF DQRNANDLLS QIRQHSSAFG DGLQRLAHYF ANGLETRLAA  360
GTPSYMPLEG TTSADMLKAY KLYVTSSPLQ RLTNYLATQT FLVENEGSVH IIDFGICYGF  420
QWPCLIKKLS ERHGGPPRLR ITGIELPQPG FRPAERVEET GRRLANYCKK FNVPFEYNCL  480
AQKWETIKLA DLKIDRNEVT VVSCFYRLKN LPDETVEVKS PRDAVLKLIR MINPNMFIHG  540
VVNGTYSAPF FLTRFREALY HFSSLFDMFE ANVPREDPER VMLEKGLFGR DAINVIACEG  600
AERVERPETY KQWQVRNQRA GFKQVRFDPQ LVNHEKEMVK KEYHKDFVVA EDGKWVLLGW  660
KGRILNAISA WTPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4731267324379Protein SCARECROW
5b3h_D4e-4731267324379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215790.0cotyledon| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G036900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025981534.10.0LOW QUALITY PROTEIN: uncharacterized protein LOC100779806
TrEMBLA0A0R0G6U90.0A0A0R0G6U9_SOYBN; Uncharacterized protein
STRINGGLYMA15G04160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-167GRAS family protein