PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G033800.1.p
Common NameGLYMA_15G033800, LOC100798932
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 448aa    MW: 50831 Da    PI: 6.1756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G033800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.51.3e-21116212185
             trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 
                          +Wt++ v++Li++++ ++++   g            +kk++W+ vsk m  +g+++sp+qC++k+++lnkryk+++++ +++t ++++++
  Glyma.15G033800.1.p 116 KWTDNVVRLLITVVSCVGDDGTIGGmdchkrksgvlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVEN 205
                          7**************888777765444466667777**********************************************85788888 PP

             trihelix  79 cpyfdql 85 
                           ++ d++
  Glyma.15G033800.1.p 206 PVLMDSM 212
                          8877777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-18114239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNSSGLGGGF LSGPSGEILD LESPFHRHQH TQLGHPSITG QQHMNMMSGL ESDHPIGLIE  60
VKSLNAALNF GKGKAVAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN  120
VVRLLITVVS CVGDDGTIGG MDCHKRKSGV LQKKGKWKTV SKIMIGKGCH VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTCC QVVENPVLMD SMPNLSAKMK DDVRKILSSK HLFYKEMCAY  240
HNGQRIPNSH ELDLQGYSLE HGRDSRDNNG SEDEDEDNND SEDDESDDEI NINAHEDGGR  300
MQQLCDRNKL SEEDVHFGPQ TSRMDKFEVE MARVFQDPTK SLHEQREWIK IQMLQLQEQN  360
ISYQAQALEL EKQRLKWLRY CSKKDRELEK LRLENKRMKL ENEHRILKLK QKELEADFST  420
SEMSLDPASL GINRPQGREH ISLGRQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.293200.0meristem| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G033800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547125.20.0uncharacterized protein LOC100798932
TrEMBLA0A0R0G3N10.0A0A0R0G3N1_SOYBN; Uncharacterized protein
STRINGGLYMA15G03850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.17e-73