PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G030200.5.p
Common NameGLYMA_15G030200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 191aa    MW: 21989.8 Da    PI: 7.237
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G030200.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.73e-2677167190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++  +++++    + + tr gC+a++++ ++++gkw+vtk+++eH+H+
  Glyma.15G030200.5.p  77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYLHRKDR-VlpPPPATREGCQAMIRLALRDRGKWVVTKFVKEHTHK 165
                          6******************************************99883333.2448899******************************* PP

                 FAR1  89 la 90 
                          l+
  Glyma.15G030200.5.p 166 LM 167
                          97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2377167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDHQSGQGFD SDDSDLDMQA EISDKHEKVD EFSKNLEICG GEDEMFVEQP VADISTDIEA  60
VEPFIGMEFN SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK  120
YLHRKDRVLP PPPATREGCQ AMIRLALRDR GKWVVTKFVK EHTHKLMSPS KVPCRGSGKH  180
LVSEYWWGFK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.194710.0cotyledon| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G030200.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546989.11e-136protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_006597226.11e-136protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_028203073.11e-136protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028203074.11e-136protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0FVF71e-140A0A0R0FVF7_SOYBN; Uncharacterized protein
STRINGGLYMA15G03470.31e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-29FAR1 family protein