PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G029900.4.p | ||||||||
Common Name | GLYMA_15G029900, LOC100806900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 276aa MW: 30969.1 Da PI: 8.922 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 89.3 | 5.5e-28 | 112 | 199 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YAk+vGF +r+sk ++s+r+g+ + r +vC++eg+r ++k++ k r+raetr+gC+a++ v+k ++gkw++tk+ eH+H+l+p Glyma.15G029900.4.p 112 FYNAYAKRVGFIIRVSKLSRSRRDGTAIGRALVCNREGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVITKFIMEHTHPLTP 199 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-25 | 112 | 199 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MTFGLVCLAS TNALLTFRMI LFWVEFGIDA SINGETVGNA TIVQINSSTA DGNKVGCSSF 60 NPAYKQGHDD NITQDSSGGD TIPSGIPAVS VASVDEPYVG QEFESEAAAH AFYNAYAKRV 120 GFIIRVSKLS RSRRDGTAIG RALVCNREGY RMPDKREKIV RQRAETRVGC RAMILVRKVS 180 SGKWVITKFI MEHTHPLTPG KGRRDCIYEQ YPNEHDKIRE LSQQLAIERK RSATYKRHLE 240 LIFEQIEEHN DSLSKKIQHI VDSVKEMETK EQNQR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25928 | 0.0 | flower| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G029900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006597224.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X3 | ||||
Refseq | XP_028202433.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12-like isoform X3 | ||||
TrEMBL | A0A0R0FV16 | 0.0 | A0A0R0FV16_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G03440.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-98 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G029900.4.p |
Entrez Gene | 100806900 |