PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G029500.1.p
Common NameGLYMA_15G029500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 393aa    MW: 44287.7 Da    PI: 8.6727
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G029500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.7e-07155196439
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                            C+ +e+ +++  C  ++  lC++C +e H        H++
  Glyma.15G029500.1.p 155 IQCDVCERAPATVICCADEAALCAKCDVEVHAAnklaskHQR 196
                          57*****************************65667777765 PP
2zf-B_box29.61.4e-09205246237
             zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                          + ++C+ +++k++ +fC +++ l+C+dC + +H+       H
  Glyma.15G029500.1.p 205 KLPTCDICQDKPAFIFCVEDRALFCQDCDEPIHSAgslsanH 246
                          689******************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.5E-12152199IPR000315B-box-type zinc finger
PROSITE profilePS501199.314152199IPR000315B-box-type zinc finger
PfamPF006432.7E-5155196IPR000315B-box-type zinc finger
CDDcd000217.42E-7155199No hitNo description
PROSITE profilePS501198.973204251IPR000315B-box-type zinc finger
SMARTSM003361.0E-14204251IPR000315B-box-type zinc finger
PfamPF006432.0E-8205247IPR000315B-box-type zinc finger
CDDcd000211.28E-7209250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MWFSSFLSPF LMRHSKVRPN APSDDQSSQL THNPQLDHGG WSRRGREFCE ARRAFLNSYH  60
LSLERKNNVS FKEKLKKSVK EVNEAAMGVV LGMRRGVSKR RVGIKVFRVK MSSHSMVLVT  120
LRCFIPWLNK MKKLLAKRRP SFWCCRRKRR INMKIQCDVC ERAPATVICC ADEAALCAKC  180
DVEVHAANKL ASKHQRLLLQ CLSSKLPTCD ICQDKPAFIF CVEDRALFCQ DCDEPIHSAG  240
SLSANHQRFL ATGIRVASSS NCTKDNEKSH SEPPNRSAQQ VSAKIPPQQV PSFTSSWAVD  300
DLLELTGFES PEKKESLQFG ELEWLTDVGI FGEQFAQEAL AAAEVPQLPE THNSSSVASY  360
KTSKSYMSHK KPRIEVLNDD DDDEYFTVPD LG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136148KRRPSFWCCRRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328640.0cotyledon| flower| leaf| meristem| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G029500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0960880.0BT096088.1 Soybean clone JCVI-FLGm-20I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240034.11e-176B-Box-type zinc finger protein
SwissprotQ962882e-93BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A0R0FVE50.0A0A0R0FVE5_SOYBN; Uncharacterized protein
STRINGGLYMA15G03400.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Representative plantOGRP53971020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-83DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]