PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G019400.1.p
Common NameGLYMA_15G019400, MYB52
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 361aa    MW: 39229.1 Da    PI: 8.9001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G019400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13115159347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  Glyma.15G019400.1.p 115 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 159
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.98108164IPR017930Myb domain
SuperFamilySSF466898.97E-17110164IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-18111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-11112158IPR009057Homeodomain-like
SMARTSM007172.6E-10112162IPR001005SANT/Myb domain
CDDcd001675.90E-9115160No hitNo description
PfamPF002496.7E-11115159IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTRRCSHCTN NGHNSRTCPS RGGGGVKLFG VRLTDGSIIK KSASMGNLNL SSSSSSAAAA  60
HLQFRSSPSS SNLPAASSPN PSSPCSDPPQ GYLSDDPAHV STFANRRGDR KKGVPWTEEE  120
HRLFLIGLQK LGKGDWRGIA RNFVVSRTPT QVASHAQKYF IRQSHATRRK RRSSLFDMVP  180
DMSSDQPSVP EEQVLLPPPE NSQPCNGKSQ PSLNLSLKSE FEPMETTSQE NVQQTNEPMM  240
GSNRLTPMAP HGCFPAYLPV PFPVWPSTWV HPFEEVKGGE TCHHQIHKPI PVIPKEPVNV  300
DELVGMSHLS IGEAQVRDRE PSPLSIKLLG EPSRQSAFHA NVPVGSSDLN NGKDNAIQAV  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286180.0hypocotyl| leaf| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G019400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-158AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235649.10.0MYB transcription factor MYB52
SwissprotQ7XC576e-96MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLQ0PJL80.0Q0PJL8_SOYBN; MYB transcription factor MYB52
STRINGGLYMA15G02250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-100MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]