PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.14G202300.8.p

Common Name

GLYMA_14G202300, LOC100813489

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

LBD

Protein Properties

Length: 250aa MW: 26723.5 Da PI: 7.9251

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.14G202300.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.3	9.4e-42	46	145	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l Glyma.14G202300.8.p 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTL 135 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Glyma.14G202300.8.p 136 QAELNAIRAE 145 ***99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.529	45	146	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-42	46	143	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MFGHPETDRL DEIITTARAE EEASSQMGRK HFYGPTPGTT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKM LMEVPEGQRA DAANSLVYEA NLRLRDPVYG 120 CMGAISALQQ QVQTLQAELN AIRAEILKYK YREAASIISS QHVALVSSAD AISIAAIPAD 180 SSQGLSQPHA HPHPPPPKPL PSPLPKPLPS PSIILSSLSS SSASSVYTPP KSTMSLGSIS 240 TTANVPYFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	39	157	4	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	39	157	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.14G202300.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-167	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544924.1	0.0	LOB domain-containing protein 13 isoform X1
Refseq	XP_028199297.1	0.0	LOB domain-containing protein 13-like isoform X1
Swissprot	Q9AT61	3e-74	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0B2PI30	0.0	A0A0B2PI30_GLYSO; LOB domain-containing protein 13
TrEMBL	K7M865	0.0	K7M865_SOYBN; Uncharacterized protein
STRING	GLYMA14G38280.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-76	LOB domain-containing protein 13

Link Out ? help Back to Top
Phytozome	Glyma.14G202300.8.p
Entrez Gene	100813489

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]