PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G202300.4.p | ||||||||
Common Name | GLYMA_14G202300, LOC100813489 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 26723.5 Da PI: 7.9251 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.4e-42 | 46 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l Glyma.14G202300.4.p 46 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQTL 135 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Glyma.14G202300.4.p 136 QAELNAIRAE 145 *****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.529 | 45 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-42 | 46 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MFGHPETDRL DEIITTARAE EEASSQMGRK HFYGPTPGTT LNTVTPCAAC KLLRRRCAEE 60 CPFSPYFSPH EPQKFAAVHK VFGASNVSKM LMEVPEGQRA DAANSLVYEA NLRLRDPVYG 120 CMGAISALQQ QVQTLQAELN AIRAEILKYK YREAASIISS QHVALVSSAD AISIAAIPAD 180 SSQGLSQPHA HPHPPPPKPL PSPLPKPLPS PSIILSSLSS SSASSVYTPP KSTMSLGSIS 240 TTANVPYFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-45 | 39 | 157 | 4 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-45 | 39 | 157 | 4 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269|PubMed:12068116}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G202300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-167 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003544924.1 | 0.0 | LOB domain-containing protein 13 isoform X1 | ||||
Refseq | XP_028199297.1 | 0.0 | LOB domain-containing protein 13-like isoform X1 | ||||
Swissprot | Q9AT61 | 3e-74 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A0B2PI30 | 0.0 | A0A0B2PI30_GLYSO; LOB domain-containing protein 13 | ||||
TrEMBL | K7M865 | 0.0 | K7M865_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G38280.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 7e-76 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G202300.4.p |
Entrez Gene | 100813489 |
Publications ? help Back to Top | |||
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