PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G194100.1.p
Common NameGLYMA_14G194100, LOC100819521
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 691aa    MW: 75126.4 Da    PI: 6.1442
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G194100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07270290526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  Glyma.14G194100.1.p 270 PCPEFRK-GSCSKGDTCEYAHG 290
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002044.36E-1519151No hitNo description
Gene3DG3DSA:1.25.40.201.9E-1631178IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-769141IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.26E-1570150IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.8273151IPR020683Ankyrin repeat-containing domain
SMARTSM002483.273103IPR002110Ankyrin repeat
SMARTSM002484.0E-5108140IPR002110Ankyrin repeat
PROSITE profilePS5008812.957108143IPR002110Ankyrin repeat
SMARTSM003561.1E-4265291IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5270290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.037270292IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.991300324IPR000571Zinc finger, CCCH-type
SMARTSM0035616300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MCGVSKGKPS QFGLVMEEYA KEGMHHIISA LLEFSAADDL VSFKDAVEKE GHDIDGVGFW  60
YGRCVASKKI GYEERTPLMV ASMFGSLGVS TYILSTGSVD VNWASRSDGA TALHCAVAGG  120
SAASIEVVKL LLDASADVNA IDANGNRPID LIGSVTNSIF SQRSRVLQAL LEGTSDADQA  180
CLALPEVIDQ IEEQRQDMTT PRVSKDYPID LSLPDIKNGI YGTDEFRMYT FKVKPCSRAY  240
SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGSCS KGDTCEYAHG IFECWLHPAQ  300
YRTRLCKDES GCTRRVCFFA HKPEELRPLY ASTGSAIPSP RSYSASASAL EMGSVSPIAL  360
GSPSVLMPPT STPPLTPSGA SSPIAGSMWS QSNVSVPTLQ LPKSRLKTAS TARDIDLDIE  420
LLGLETHRRR QQLMMDEISA LSSPNWKNSM PNSPSFHVPL SDHTELNRLS GVKPANLEDM  480
FGSLDPSILS KYHGISLDVA GTQLQSPTGI QMRQNVNQQL GGYSSSLSTS NVIGSRSFRL  540
DQSGEAATVA LNPRAAAFAK RSQSFIERSV VNHHSEIPSP NPSTFSNWGS PGGKLDWAIN  600
GEELNKLRKS ASFGFRSSSS PLTKASNKIS ANVDDEPDVS WVNSLVKDAP PESGEYSVED  660
HRKLLQCHNG TDAIPAWLEQ LYLDQEQMVA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.33310.0cotyledon| epicotyl| flower| leaf| meristem| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G194100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877020.0KM587702.1 Glycine max clone GmC3H3 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006596425.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_014622619.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLI1MBB40.0I1MBB4_SOYBN; Uncharacterized protein
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein