PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G166500.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 520aa    MW: 57239.2 Da    PI: 7.2245
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.7e-131351844899
                          EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          +++iyr++++r+++t+GW++Fv+ ++L +gD+vvF   ++s+++  v+++r+
  Glyma.14G166500.1.p 135 LRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFV--KDSDGRVSVGIRRA 184
                          5899********************************..7799999****996 PP
2Auxin_resp74.33.4e-25220298183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa++a+ + +FevvY+Pr++ ++Fvv++e ve+++k+ +  GmR+k+a+etedss+ ++ +Gtv++  ++     +n +Wr+L+
  Glyma.14G166500.1.p 220 AAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCAWVGGMRVKIAMETEDSSRMTWfQGTVSSACAS-----ENGPWRMLQ 298
                          688999***********************************************************99985.....467777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-16108185IPR015300DNA-binding pseudobarrel domain
CDDcd100177.12E-11111177No hitNo description
SMARTSM010190.0058112185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-15135186IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10135184IPR003340B3 DNA binding domain
PROSITE profilePS508638.924145185IPR003340B3 DNA binding domain
PfamPF065077.9E-22220298IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSPPQPRRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHLE HASPSHYLNP LLRSLPFVPC  60
HVSSLDFLAD PFSDEVFAKF LLTPLSQQPF PNDTTEARNE EEKDRENGVV SFSKILTPSD  120
ANNGGGFSVP RYLALRHIYR GTPRRHLFTT GWSKFVNHKK LVAGDTVVFV KDSDGRVSVG  180
IRRAARFAAA IETPQPPPAE REGFSRSATG RVTAEAVAAA AESAARNAPF EVVYYPRTGF  240
ADFVVSAEVV EESMKCAWVG GMRVKIAMET EDSSRMTWFQ GTVSSACASE NGPWRMLQVN  300
WDEPEVLQNA KRVSPWQVEL VSLPFALHTV YSPNKRLRSD QGSGLLSNRE GDPFFPMTGF  360
PNSTMEHMTG FPNSTVGHMD KSLLSYDTFP AGMQGARHDL FSPSSFSNFL NDKSYLYMGS  420
GSFGNNPVQS LGTVTTELNM SSSQSDDLSP HSQSSFHSFA REFAGTRNCD TKVASGSILL  480
FGKIIQPAES DLHDGDCMER DGSRGSNKLK TVEACYFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-481231922353Auxin response factor 1
4ldy_B2e-481231922353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198990.10.0auxin response factor 17-like isoform X1
SwissprotQ84WU61e-140ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A368UH440.0A0A368UH44_SOYBN; Auxin response factor
STRINGGLYMA14G33730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-123auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]