PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.14G094800.2.p | ||||||||
Common Name | GLYMA_14G094800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 249aa MW: 27722.3 Da PI: 10.3101 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.6 | 6.9e-18 | 112 | 145 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+t++TplWR gp g+k+LCnaCG+++rk + Glyma.14G094800.2.p 112 CSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 145 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.086 | 106 | 142 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.19E-12 | 106 | 146 | No hit | No description |
SMART | SM00401 | 7.4E-18 | 106 | 157 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.9E-15 | 110 | 145 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.65E-12 | 111 | 148 | No hit | No description |
Pfam | PF00320 | 8.6E-16 | 112 | 145 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 112 | 137 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MILHDGSSSN CNSSFNISPE TVVMVDPLSS ACDRRNLPSE EESKNNDHGS GNKWMSSKMR 60 LMKKMMRPSI SPTTDKAINS SPRFQNHQGL ESRRYSQRSP RNNNGSSTPR VCSDCNTSTT 120 PLWRTGPKGP KSLCNACGIR QRKARRAMAE AANGLVTPIA CEKTRLHNKE KKSRMNHFAQ 180 FKNKYKSTTT TTTTTVGSSE GVRKLEYFNN FAISLRSNNS DFEQMFPRDE VAEAALLLMD 240 LSCGFVHL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12633 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.14G094800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 9e-80 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545375.1 | 0.0 | putative GATA transcription factor 22 | ||||
Refseq | XP_028199200.1 | 0.0 | putative GATA transcription factor 22 | ||||
TrEMBL | A0A0R0GBN9 | 0.0 | A0A0R0GBN9_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445H3V9 | 0.0 | A0A445H3V9_GLYSO; Putative GATA transcription factor 22 | ||||
STRING | GLYMA14G10830.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-21 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.14G094800.2.p |