PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G084600.1.p
Common NameGLYMA_14G084600, LOC100500674
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 232aa    MW: 26520.9 Da    PI: 9.2102
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.8e-2191150357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Glyma.14G084600.1.p  91 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLskygKIEGKNVFYWFQNHKARERQ 150
                          7*****************99**************************************97 PP
2Wus_type_Homeobox119.71.3e-3891152465
    Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq
  Glyma.14G084600.1.p  91 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSKYGKIEGKNVFYWFQNHKARERQKQ 152
                          8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.3E-788155IPR001356Homeobox domain
SuperFamilySSF466897.27E-1290155IPR009057Homeodomain-like
CDDcd000866.85E-591152No hitNo description
PfamPF000463.5E-1991150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-792150IPR009057Homeodomain-like
PROSITE profilePS5007110.04296151IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKVHQFARGF WEHEPSLTLG CKRLRPLAPK LSNTDTISPP HHPVTTFDLK SFIKPESASR  60
KLGIGSSDDN TNKRDPSSPQ GQAETHIPGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE  120
QITAQLSKYG KIEGKNVFYW FQNHKARERQ KQKRNNLGLA HSPRTTLTTS PPFSCCVITT  180
MDTTKRGEVV EREEEDSPLK KCRSWAFEYL EDQREEEHRT LELFPLHPEG R*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548320.0epicotyl| hypocotyl| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0916190.0BT091619.1 Soybean clone JCVI-FLGm-8M2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544467.11e-174WUSCHEL-related homeobox 4
RefseqXP_028199046.11e-174WUSCHEL-related homeobox 4-like
RefseqXP_028199047.11e-174WUSCHEL-related homeobox 4-like
RefseqXP_028199048.11e-174WUSCHEL-related homeobox 4-like
SwissprotQ6X7J92e-68WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0B2RTW51e-172A0A0B2RTW5_GLYSO; WUSCHEL-related homeobox 4
TrEMBLI1M8P21e-172I1M8P2_SOYBN; Uncharacterized protein
STRINGGLYMA14G09310.11e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Representative plantOGRP71671117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.18e-71WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]