PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G337100.1.p
Common NameGLYMA_13G337100, LOC100792533
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 719aa    MW: 79836.9 Da    PI: 8.5703
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G337100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07618667147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Glyma.13G337100.1.p 618 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 667
                          678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.14E-7418507IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502423493IPR000626Ubiquitin domain
PROSITE profilePS5129415.654613672IPR017930Myb domain
SMARTSM007173.5E-7617670IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10618668IPR009057Homeodomain-like
SuperFamilySSF466892.33E-15619700IPR009057Homeodomain-like
CDDcd116601.45E-16619669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MVLQKRLDYS FYGYQVPTKR RATRLAKRRV TFQRRLEDNQ MCAFDLLATV ADNLLQEKQN  60
PTTSSDRSSE KDGDGFPKEE RQDANKPFKT ELSDEASCDR KCQLEFVKEG SSNANSFKVE  120
LSDEGSSDRK CFSNISSQVY NQNCCSKELP EHEIDGHLCI ASIVTSSSCS EKIVAETLVD  180
GKGHNGMEKL ASKVELGSCG YLESRGCKLD GDVSKVKDDK FGKVPIDTGT GLCCFEDTLD  240
EKPLALISSC GNAKMSGYDD SMPQSSWSKG CDNVLVDSRD DDENFSGCAH PSTKIKSFRP  300
ITCIDDRKTK KRLASKHHKV SQESKHDILS NSVLDGNLKS VYSSRKNYYK SQRSQMNIPF  360
KKRKLFNCSS DTNSNGYIRS DDTCYSPKND TNQSVSCSSS GMSQDHGTSS LGHSALRSRD  420
SYVKLRIKSF RVPELFIEIP ETATVGSLKR TVMEAVTAVL GGGLRVGVIL HGKKVRDDSK  480
TLLQTGISHD NHLDALGFAL EPNCSRNRPS ACATTDSLHI PSADMPQPLI GYPSSPAVIH  540
QRIQGFSNML AKHQATSSGN LVESDHDSAP SPINTSGEKY LSDSKELITV PEMGMEALAV  600
LPVHQKSKRT EIAQRRIRRP FSVTEVEALV QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL  660
KDKWKTLVHT ARISAQQRRG EPVPQELLDR VLTAHAYWSQ QQTKQQLKHH STKPCLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-556027081107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532480.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G337100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941300.0BT094130.1 Soybean clone JCVI-FLGm-18O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595029.10.0telomere repeat-binding protein 1 isoform X1
SwissprotQ6R0E31e-128TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLK7M3F10.0K7M3F1_SOYBN; Uncharacterized protein
STRINGGLYMA13G41210.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-116TRF-like 2