PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.13G334900.1.p | ||||||||
Common Name | GLYMA_13G334900, LOC100786177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 213aa MW: 24109.1 Da PI: 8.9106 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.1 | 9.4e-21 | 20 | 79 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq++ Le+l+++ r+ps+e++++++++l +++ ++V++WFqN++a++++ Glyma.13G334900.1.p 20 SRWSPTKEQIDMLENLYKQgIRTPSTEQIQQITSRLraygHIEGKNVFYWFQNHKARQRQ 79 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.6 | 4.7e-37 | 19 | 80 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt+eQi +Le+lyk+G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqk Glyma.13G334900.1.p 19 VSRWSPTKEQIDMLENLYKQGIRTPSTEQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQK 80 68***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.353 | 15 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-6 | 17 | 84 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-12 | 19 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 20 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-18 | 20 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.90E-6 | 21 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MESHSSDAEA ENVRTHSSVS RWSPTKEQID MLENLYKQGI RTPSTEQIQQ ITSRLRAYGH 60 IEGKNVFYWF QNHKARQRQK LMKQQTIAYS NRFLRASHPI CQNVACAPYC LQRSGFSFYP 120 QQSKVLASGG ISSTGPLGMQ RMFDGMQSSE HPDCNREVLT LFPLHPTGIL KEKTTHQVPS 180 LASTSVVAVD EDGHLGNQPF FNFFTTEPRS RE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.39436 | 1e-134 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac, but not in the synergids, the antipodals or the male gametophyte. After fertilization, it is expressed in the zygote. After the first division of the zygote, it is detected exclusively in the apical daughter cell, while WOX8 is expressed in the basal daughter cell. Subsequently, it is expressed in all cells of the 4-cell embryo proper and predominantly in the apical domain of the 8-cell embryo. However, in some 8-cell embryos it is also weakly expressed in the central domain suggesting that expression shifts to the most apical cells during this stage. Expression remains restricted to the apical domain in the 16-cell embryo and the early-globular stage. Not expressed in the apical domain thereafter. However, in heart stage embryos it is weakly expressed in a ring of epidermal cells approximately at the junction of hypocotyl and root. Not expressed in mature embryos, endosperm or postembryonically in inflorescences. {ECO:0000269|PubMed:14711878}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.13G334900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT096510 | 1e-132 | BT096510.1 Soybean clone JCVI-FLGm-15H19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542024.3 | 1e-160 | WUSCHEL-related homeobox 2 | ||||
Swissprot | Q6X7K1 | 7e-43 | WOX2_ARATH; WUSCHEL-related homeobox 2 | ||||
TrEMBL | I1M4V5 | 1e-159 | I1M4V5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G41000.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 | Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-45 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.13G334900.1.p |
Entrez Gene | 100786177 |
Publications ? help Back to Top | |||
---|---|---|---|
|