PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G333200.3.p | ||||||||
Common Name | GLYMA_13G333200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 22823 Da PI: 4.4796 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.4e-14 | 2 | 46 | 5 | 48 |
-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Glyma.13G333200.3.p 2 TPQEERLVLELHSKWGNRspWWSRIARKLP-GRTDNEIKNYWRTLM 46 9******************9**********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.1E-7 | 1 | 48 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.303 | 1 | 50 | IPR017930 | Myb domain |
CDD | cd00167 | 1.79E-11 | 1 | 46 | No hit | No description |
SuperFamily | SSF46689 | 7.57E-12 | 2 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-12 | 2 | 45 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MTPQEERLVL ELHSKWGNRS PWWSRIARKL PGRTDNEIKN YWRTLMRKKA QEKKRGEAAS 60 SSPTPSSVDS SISSNNHAVD PHASKKAGEE SFYDTGGDNG VIAATQDQGQ KGDQQGLFSM 120 DDIWKDIDNM SEENNTTLQP VSVYDGHSEE GCNFSCPPQV PSPSSWEYSS SDPLWVMDEE 180 SLFCPLSEEP YFSCYAQGTV FLTG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G333200.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096687 | 0.0 | BT096687.1 Soybean clone JCVI-FLGm-21E3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235983.2 | 1e-152 | MYB transcription factor MYB139 | ||||
Refseq | XP_028191403.1 | 1e-152 | transcription factor MYB48-like isoform X1 | ||||
Swissprot | Q9LX82 | 4e-38 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | I1M4T0 | 1e-151 | I1M4T0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G40830.4 | 1e-115 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 7e-36 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G333200.3.p |
Publications ? help Back to Top | |||
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