PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G315300.1.p | ||||||||
Common Name | GLYMA_13G315300, LOC100784960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28450.6 Da PI: 9.0346 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.9 | 1.5e-47 | 4 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Pt+eelvv+yL++++eg+ +++++vi+ +di+ vePw+Lp+ +++++++w+fFs+r++++a+g r+nr+t+sgyWkat Glyma.13G315300.1.p 4 LPPGFRFYPTEEELVVFYLHNQLEGQIHDTSRVIPVTDINGVEPWNLPTlageFCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKAT 93 79****************************9*****************545654445777****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 g+ +v+s++++++g+kkt+vfykg+ap+g+kt+W mh+y+ Glyma.13G315300.1.p 94 GSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHQYK 134 ****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-49 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.034 | 4 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEFLPPGFRF YPTEEELVVF YLHNQLEGQI HDTSRVIPVT DINGVEPWNL PTLAGEFCRG 60 DTEQWFFFSP RQEREARGGR PNRTTASGYW KATGSPGHVY SSDNKVIGMK KTMVFYKGKA 120 PTGRKTKWKM HQYKAIEHSH QSNTAPPKLR HEFSLCRVYV ISGSFRSFDR RPLEMPRIEL 180 RVDGDRGAAS TSTQQRAAVV DGLSSSDTSS HSGGGRGGSH ISEAGAGSSG TNWNASNSRV 240 EEPLWEWEQL NWP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_B | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_C | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swm_D | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_A | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_B | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_C | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
3swp_D | 4e-38 | 4 | 159 | 20 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G315300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235234 | 1e-130 | AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543426.1 | 0.0 | NAC domain-containing protein 90 isoform X2 | ||||
Refseq | XP_028188791.1 | 0.0 | NAC domain-containing protein 90-like isoform X2 | ||||
Swissprot | Q9FMR3 | 3e-90 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0B2RI02 | 0.0 | A0A0B2RI02_GLYSO; NAC domain-containing protein 90 | ||||
TrEMBL | I1M4B5 | 0.0 | I1M4B5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G39160.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-89 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G315300.1.p |
Entrez Gene | 100784960 |
Publications ? help Back to Top | |||
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