PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G267600.1.p
Common NameGLYMA_13G267600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 301aa    MW: 34101.3 Da    PI: 6.5077
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G267600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.97.7e-22138198259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+  +s++ rsYYrCt++   gC++ k+v+r +++p +  +tY ++H+++
  Glyma.13G267600.1.p 138 EDGYTWRKYGQKMTSQSKYLRSYYRCTHKndqGCQAIKQVQRIQDNPPLYRTTYYSHHTCK 198
                          8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-24130200IPR003657WRKY domain
PROSITE profilePS5081120.53132200IPR003657WRKY domain
SuperFamilySSF1182905.89E-23134200IPR003657WRKY domain
SMARTSM007742.8E-32137199IPR003657WRKY domain
PfamPF031063.4E-22138198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MENQLPNGKK AMEEELIKGH GMANQLLEVL VQDKLNTHLE EEGSSKSVLP FVEDLVRKVL  60
CSFTNTLLIL NSNNDVSNEV AASITLRDVS SSINCPKLQS VDETCKSPNI LNPKSGSGCY  120
KRKSIAPTWK KDSSILIEDG YTWRKYGQKM TSQSKYLRSY YRCTHKNDQG CQAIKQVQRI  180
QDNPPLYRTT YYSHHTCKSP MNPEIIVEPF SPSASSILLS FDNNLQSKQE NPFSSSILAS  240
TKHEPQEVIH NEHSAQNKLS TFENLLFYDY DIPFDYSRNA TLLSSTEAVQ FENVYEQYGF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18137198869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G267600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357885.10.0probable WRKY transcription factor
TrEMBLK7M2570.0K7M257_SOYBN; Uncharacterized protein
STRINGGLYMA13G34261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-34WRKY DNA-binding protein 70