PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G267400.2.p
Common NameGLYMA_13G267400, LOC102663141
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 291aa    MW: 33169.2 Da    PI: 6.4351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G267400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.74.8e-18132189159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dgy+WrKYGqK+  +++    Y rCt++   gC ++k+v+r +edp + ++tY g+Hn++
  Glyma.13G267400.2.p 132 MEDGYAWRKYGQKMTMNAK----YLRCTHKydqGCLATKQVQRIQEDPPLYHTTYYGHHNCK 189
                          58************98875....999***99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-19120189IPR003657WRKY domain
PROSITE profilePS5081116.329127191IPR003657WRKY domain
SuperFamilySSF1182906.41E-19129189IPR003657WRKY domain
SMARTSM007746.2E-30132190IPR003657WRKY domain
PfamPF031061.9E-17133189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENQPSNGRK AIEEELIKGR DIANQLLEIL APKSNTTQHK GVEVEALVLP FAEDLVRKVL  60
RSLTNTLLLL NTHSDHVSDE VVLPVTIKGV SSSVKCQKPE YKDESFNAKR RSGSYKRKSS  120
APTWEKNSSI LMEDGYAWRK YGQKMTMNAK YLRCTHKYDQ GCLATKQVQR IQEDPPLYHT  180
TYYGHHNCKS SLMLEPASSS DSSMFLSFSN TFPNKAEYPF SSSLYSSMKQ EPMEVIHEDH  240
IVHNQLPSSD YHMLCDYDLD FNYSRYGTML SSTESVQFDE VCRSDQEFDG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-17132189869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G267400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2543242e-78AC254324.1 Phaseolus vulgaris cultivar G19833 clone PV_GBb015-K06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621824.10.0probable WRKY transcription factor 70 isoform X2
TrEMBLA0A0R0H7770.0A0A0R0H777_SOYBN; Uncharacterized protein
STRINGGLYMA13G34240.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-21WRKY DNA-binding protein 70