PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G257000.1.p | ||||||||
Common Name | GLYMA_13G257000, LOC100810422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 207aa MW: 23644.1 Da PI: 9.7092 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.1 | 1.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs+t kl+ey+s Glyma.13G257000.1.p 9 KKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSTTSKLFEYAS 59 689**********************************************86 PP | |||||||
2 | K-box | 37.9 | 7.3e-14 | 94 | 169 | 23 | 98 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 L+keie +e +l Ge+++ L++keLq++e+ L++ ++i + K+e ++++i++l+ ke +l een++L++ + Glyma.13G257000.1.p 94 ILRKEIEHKTNEMSQLNGEEIQGLTIKELQKVEELLQRRWTTISKIKDEKIIQEINHLKTKEAKLMEENQKLKQSF 169 5899999999**************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-30 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-35 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 3.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.519 | 85 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.8E-12 | 94 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MARKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFST TSKLFEYASS 60 SMQQILERRD RHSGIQGLVN PSIGQQLGSD SLGILRKEIE HKTNEMSQLN GEEIQGLTIK 120 ELQKVEELLQ RRWTTISKIK DEKIIQEINH LKTKEAKLME ENQKLKQSFV REQRQPYESF 180 TCSSSEFPPD CGNSDTSLKL GLSLFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 66 | 1 | 66 | MEF2C |
5f28_B | 2e-20 | 1 | 66 | 1 | 66 | MEF2C |
5f28_C | 2e-20 | 1 | 66 | 1 | 66 | MEF2C |
5f28_D | 2e-20 | 1 | 66 | 1 | 66 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G257000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 6e-68 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543140.1 | 1e-149 | MADS-box protein JOINTLESS isoform X2 | ||||
Refseq | XP_028188421.1 | 1e-149 | MADS-box protein JOINTLESS-like isoform X2 | ||||
Swissprot | Q9FUY6 | 2e-58 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A445IA13 | 1e-147 | A0A445IA13_GLYSO; MADS-box protein JOINTLESS isoform B | ||||
TrEMBL | K7M1W4 | 1e-147 | K7M1W4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G33051.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-48 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G257000.1.p |
Entrez Gene | 100810422 |
Publications ? help Back to Top | |||
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