PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G236800.1.p | ||||||||
Common Name | GLYMA_13G236800, LOC100780664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 922aa MW: 105045 Da PI: 4.0444 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.7e-08 | 435 | 454 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G++C+F H Glyma.13G236800.1.p 435 ICDFFAK-GWCIRGSSCSFLH 454 7******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.615 | 430 | 457 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.48E-6 | 430 | 454 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 431 | 456 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-6 | 435 | 454 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 922 aa Download sequence Send to blast |
MSLPDSPVAN DDEIDPSLDE EEEEEEEEEE EEEEEEEEEE EIEEEEEEEE EEVEEEVEEE 60 EVEGEEVEED EVDEEEEEEE EVVEEEVEEE EEEEELEEIE VEEEEEESEQ RAEEMEEEEE 120 EEVEVEEEGE EEEVEEEEEG EEEEVEEEEE EEEVEVEEEE EEEEEVEVEE KEEKEDEEQQ 180 QQQQETVEEK KEERQQQQEA EEAVKEQQKK QQQEAMEEKE EDKLAVPGSP LDADKDRQDS 240 SQHMEFEGQD KILGPVSSVA ENPEVMPPSS MHCLEENDAM LKKSEIPTLE KDELPLKYEF 300 SSHPKSRENL TSVEDYRSQV FDVEVENAGS LLQNETFGGY SEPGCNSKAN LCGDNNIDSR 360 ARATKSSSDT VQDMVIGPLP RDCLVEDSNG GQNSRIKIMQ SEIESRDNVK QMTSRTRSLS 420 PGAEIKDGNK RPRIICDFFA KGWCIRGSSC SFLHIKDTGA NIDQEAEADL VTTHQKRQLK 480 VEEGVRENVE RSRMNQQEAT PSWHPSQEKQ KFPLRDNLVP ENRFPFSASD NYFSSNLSLT 540 STRADGMATL RNQHMYKRYT STLLSHSPNS SLVSQFPASS MPLSQQILAQ SGRSLSFSNV 600 DSKKFLNTDK EYLTSKSTFS GSGSGSGRED FSLVNLSRVP SYPAGYKSKI CSYDWEPSVP 660 FRPSFFITSM NVSSPGDLYD PLRDSIEIPN IGDGSLKASL LIHGSNIQAS SQVRTYGDSA 720 VVGKHMANLN DDKSSVSSHN KFCENEPNKN CLPREKDCLP PETEITSGTY VHYQGKMGMG 780 QHTFEVADNK KKERDLTECD ARCHGEGSGR KKKRVDRDKK NHEMDVDFQM DGSMQKESKA 840 LKFFRAVLID HVKELLKPAW HEGRLSKDTH IMIVKKSVDK VVNTLEPHQI PTIDTAKQYV 900 SSSQVKIAKL VNGYVNKYGK S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28932 | 0.0 | epicotyl| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G236800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594577.1 | 0.0 | stress response protein NST1 | ||||
TrEMBL | K7M1I2 | 0.0 | K7M1I2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G31033.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10805 | 27 | 33 | Representative plant | OGRP7281 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-41 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G236800.1.p |
Entrez Gene | 100780664 |