PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G219900.1.p
Common NameGLYMA_13G219900, LOC100787772
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 533aa    MW: 58367.2 Da    PI: 7.8313
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G219900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.66.4e-36752392135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssss 69 
                           g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a +ai el+++                      +   
  Glyma.13G219900.1.p  75 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASEAISELPSLnnpfpdtpkqlsdkkrptsgggQ--- 161
                          689*************************************************************88887666655443222222220... PP

                  TCP  70 aseceaesssssasnsssg.................kaaksaakskksqksaasalnlak....esrakararare.rtrekmriknk 135
                               ++++ +++     +                  + +++a+s+ s++s+ s l+l++      r kar+rare   +ek + k+k
  Glyma.13G219900.1.p 162 -----QQQQIQQG-----HfddadgdtsypqnqsqnLSLSKSACSSTSETSKGSGLSLSRseirVNRVKARERARErAAKEKEKEKEK 239
                          .....22222222.....0223334444444444445566666677777777777777765333556999999999444455444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-4276235IPR005333Transcription factor, TCP
PROSITE profilePS5136931.41577135IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946215233IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MEEDEIQACK FPRVGNGRSS DQYQEEEEEG GDLRLRKGVG VGGGGGGGGS DASTNHFHQS  60
SWHHSSRIIR VSRASGGKDR HSKVMTSKGL RDRRVRLSVT TAIQFYDLQD RLGYDQPSKA  120
VEWLIKAASE AISELPSLNN PFPDTPKQLS DKKRPTSGGG QQQQQIQQGH FDDADGDTSY  180
PQNQSQNLSL SKSACSSTSE TSKGSGLSLS RSEIRVNRVK ARERARERAA KEKEKEKEKE  240
KEKEKESESS IAHHHHHHHV NNNNHMSHTA SFTELLTGGI GSTVTVNPNT TTTTTTTTTS  300
PNGSSVHQIH DGHDHETNLF NKGRQQQQQH HWSQTVTPMD YFSTGLLVGP SSSSARTQQH  360
QHQSSSAHFQ LGHAHALPIS PFSGENHSEQ LQHFSFMPDH LNNIPAHHVV TSSSASHQPN  420
GGDNNYNLNF SISTSTGLAG YNNRGTLQSN SPSSSFLPHH LQRFQPLDGS SNLPFFIGAA  480
APSSAPPTMD NNNNNNSNNH HHLQFSPVFD GRLQLCYGDG TRHSDHKGKG KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2382136155Putative transcription factor PCF6
5zkt_B1e-2382136155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G219900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0769921e-154AB076992.1 Pueraria montana var. lobata PlCYC4 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541668.10.0transcription factor TCP2
RefseqXP_006594511.10.0transcription factor TCP2
RefseqXP_006594512.10.0transcription factor TCP2
RefseqXP_006594513.10.0transcription factor TCP2
RefseqXP_014621249.10.0transcription factor TCP2
RefseqXP_028189290.10.0transcription factor TCP2-like
RefseqXP_028189291.10.0transcription factor TCP2-like
RefseqXP_028189292.10.0transcription factor TCP2-like
RefseqXP_028189293.10.0transcription factor TCP2-like
RefseqXP_028189294.10.0transcription factor TCP2-like
RefseqXP_028189295.10.0transcription factor TCP2-like
TrEMBLI1M1H90.0I1M1H9_SOYBN; Uncharacterized protein
STRINGGLYMA13G29160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2