PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G202800.1.p
Common NameGLYMA_13G202800, Glyma13g27280.1, LOC100791328
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 702aa    MW: 75662.1 Da    PI: 6.9257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G202800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07279299526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.13G202800.1.p 279 PCPDFRK-GACRRGDMCEYAHG 299
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-186144IPR020683Ankyrin repeat-containing domain
CDDcd002042.99E-169153No hitNo description
Gene3DG3DSA:1.25.40.203.9E-199156IPR020683Ankyrin repeat-containing domain
SMARTSM002482001040IPR002110Ankyrin repeat
PfamPF127964.1E-1019125IPR020683Ankyrin repeat-containing domain
SMARTSM002480.635787IPR002110Ankyrin repeat
PROSITE profilePS5029719.62457158IPR020683Ankyrin repeat-containing domain
PRINTSPR014154.4E-55873IPR002110Ankyrin repeat
SMARTSM002489.0E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008812.15592127IPR002110Ankyrin repeat
PRINTSPR014154.4E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6274300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035635309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKSLTVNTED SFSSLLELAS NNDIEGFKVL LEKDSSTINE VGLWYGRQNG SKQFVLEHRT  60
PLMVAATYGS IDVMKMVLLC PEADVNFACG ANKTTALHCA ASGGSTKAVD AVKLLLSAGA  120
DVNCVDANGN RPIDVIAVPP KLQGAKAVLE ELLSDNASDV SVGEFSVPVS VNSSSPGSPA  180
HSSNGMPYTP SVSPPSPVAA KFTDAAICSL SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAAPSPR SSASGPNVMD  360
MAAAMSLFPG SPSSGSSMSP SHFGQPMSPS ANGMPLSSAW AQPNVPALHL PGSNLQSSRL  420
RSSLSARDIP PEDLNMMSDL DGQQQHHLND LSCYIQPRPG ASSVSRSGRS KTLTPSNLEE  480
LFSAEISLSP RYSDPAAGSV FSPTHKSAVL NQFQQLQSML SPINTNLLSP KNVEHPLFQA  540
SFGVSPSGRM SPRSVEPISP MSARLSAFAQ REKQQQQLRS VSSRDLGANS PASLVGSPAN  600
PWSKWGSPIG KADWSVNGDS LGRQMRRSSS FERKNNGEEP DLSWVQSLVK ESPPEMIKEK  660
FASPMPTASA DGPNSNSQIE SIDHSVLGAW LEQMQLDQLV V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.43220.0cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| seed coat| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G202800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311560.0KT031156.1 Glycine max clone HN_CCL_174 C3H-type 1 Zn transcription factor (Glyma13g27280.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621190.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_028190482.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A445I7F00.0A0A445I7F0_GLYSO; Zinc finger CCCH domain-containing protein 30 isoform A
TrEMBLI1M0Y00.0I1M0Y0_SOYBN; C3H-type 1 Zn transcription factor
STRINGGLYMA13G27280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]