PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G182700.1.p

Common Name

GLYMA_13G182700, LOC100791855

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 337aa MW: 37108.3 Da PI: 8.5636

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G182700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.8	1.5e-35	48	106	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprCdstntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPvGggr++++ + Glyma.13G182700.1.p 48 SESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVR 106 5789***********************************************98776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	46	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	50	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.465	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGLSSKQVSS SGLDWKQTLL EAQNLELPKP NLMRKQQQQQ QQQTQPNSES LKCPRCDSTN 60 TKFCYYNNYN KSQPRHFCRA CKRHWTKGGT LRNVPVGGGR KNKRVRKSIT TPITTSSTTT 120 SITTTTSTCT ATVTTSIGNN NNNMDAMLGC NSHMTIQTPL ADDHKNMSSS LYQALIRPPP 180 LLLQQQNLMN NTRDLEGKDF GIGIGNGNNG IFPSLTLPFP IHHQSQSLLF PFSTSSSSFD 240 TNPCSVVSTS LRSSNVYNYG EDQFKAIEEP TINSTITTTT IVPSTNNTHH PWEIAAATSG 300 VGLGTSSNSN YWNWEDFDSL VSTDLKDPWD GSDIKP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.21239	0.0	root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G182700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003542768.1	0.0	dof zinc finger protein DOF4.6
TrEMBL	I1M0D9	0.0	I1M0D9_SOYBN; Uncharacterized protein
STRING	GLYMA13G25120.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	1e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G182700.1.p
Entrez Gene	100791855