PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G128500.1.p
Common NameGLYMA_13G128500, LOC100785842
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 635aa    MW: 74103.2 Da    PI: 8.7972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G128500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08427466345
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +WT+eE e l ++ +q+G++ Wk++a+ +g  + + ++k+ w+
  Glyma.13G128500.1.p 427 KWTPEEYEFLRKVKEQHGSD-WKSVAEALG--KHRFHVKDAWR 466
                          8*******************.********9..56677777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.14351422IPR001005SANT/Myb domain
SMARTSM007170.32424471IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-8426486IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-8427481IPR009057Homeodomain-like
PROSITE profilePS500906.876427469IPR017877Myb-like domain
PfamPF139212.0E-12428486No hitNo description
PROSITE profilePS500906.899470539IPR017877Myb-like domain
SMARTSM007173.7474541IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-5482558IPR009057Homeodomain-like
SuperFamilySSF466895.47E-5519597IPR009057Homeodomain-like
PROSITE profilePS500907.166541594IPR017877Myb-like domain
SMARTSM0071755545596IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MDEKAKKKGR KDEVMNINVA DDKEVQFLDD NQESKMKKRK KDDSSLNGIQ ELVFSKPSKK  60
MMKDNRLKSN KGKDDDQGKL MMKKKLSAEN QHVDHNEFKS NEDKDDGQYK KEEEEEKKKK  120
KKKKKKKKLS EESKSKEYNE FESNDGGDDG KGKKMKKKKL CDKSKSKENC EFNSKQMMKQ  180
KKSDAENRHE GYNEFKSNED KDDNQYKKEE KKRKKKKLSE ESKSKDYNEF ESNEGGDDDL  240
GKKRKKKKLS EESKDKEYNE FENNEGEDDG QGKKMKKKKL RDKSKNKENS EFNSNEGDVN  300
EVDDQSKKME TKKNAKADTG ESPNPAHSGS SKPKRVTFSD QVDVCCDGLI RGKRFTPEED  360
EKIKLAVFDY IESHGLGDEG LDMVLHCKSH PEIRDCWKEI GAALPQRPYV SVYTRAHILF  420
ERGEDRKWTP EEYEFLRKVK EQHGSDWKSV AEALGKHRFH VKDAWRRIKL TNTNQGRWTQ  480
EEYQNLFDLV NLDLRVRASQ DYRKSKHGML RDNIGWEAIG DKLTTRSSVL CCKKWYDKLT  540
SPMVANGVWS DTDDYRLVNA LFTLDACCME EVDWDNLLEH RPGDVCRKRW NQMVQYIGEH  600
GGKSFAEQVE ILAKRFCPDL LEVREAFDEK PVIC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116128KKKKKKKKKKKKL
2118127KKKKKKKKKK
3119127KKKKKKKKK
4209217EKKRKKKKL
5241245KKRKK
6241247KKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G128500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541381.20.0RNA polymerase I termination factor
RefseqXP_006594063.10.0RNA polymerase I termination factor
RefseqXP_006594064.10.0RNA polymerase I termination factor
TrEMBLI1LYQ80.0I1LYQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G19060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Representative plantOGRP53221418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein