PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G121000.1.p | ||||||||
Common Name | GLYMA_13G121000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 26611.4 Da PI: 6.1602 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Glyma.13G121000.1.p 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.25E-6 | 31 | 59 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFGYQEDSS KSSSDEIDRS SEQNDETGIG RSYECVFCKR GFTTAQALGG HMNIHRKDRA 60 NNKAKPNFPP SSSSKVVDES NNYANPSYLT RGNYYSSTLP DHREVDVNYS YYHQLYFPSH 120 ACGAKSPSHV QYSSEVLCVE NQRDPHLLFG QDWRQRGLSL YTNPLCVYEN KDKIENNSEE 180 DDLDLELRLG LYIFYGGQLY REMSCKLEAE RSKISIAWRL LQGKVARSCF W* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.14309 | 1e-168 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G121000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 5e-44 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006595353.1 | 1e-140 | transcriptional regulator SUPERMAN | ||||
Refseq | XP_028197015.1 | 1e-140 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | K7LZ95 | 1e-173 | K7LZ95_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G18161.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 | Representative plant | OGRP1998 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 8e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G121000.1.p |