PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G112600.1.p
Common NameGLYMA_13G112600, LOC100805456
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1132aa    MW: 126747 Da    PI: 6.5122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G112600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22126227199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W +++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Glyma.13G112600.1.p 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI- 213
                          99*****************************9545444.38************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++++l+++++r+
  Glyma.13G112600.1.p 214 -RDEKQHLLLGIRRA 227
                          .5689999****997 PP
2Auxin_resp117.98.2e-39252334183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+++s+F+++YnPras+seFvv+++k++k ++++vs+GmRf+m+fete+s  rr++Gt++g++dldpvrW+ S+Wr+++
  Glyma.13G112600.1.p 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKVTYTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKSSQWRNIQ 334
                          79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-18125226No hitNo description
SMARTSM010192.2E-22126228IPR003340B3 DNA binding domain
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012126228IPR003340B3 DNA binding domain
PfamPF065071.3E-33252334IPR010525Auxin response factor
PfamPF023099.9E-910001089IPR033389AUX/IAA domain
PROSITE profilePS5174524.69210031096IPR000270PB1 domain
SuperFamilySSF542772.06E-810161081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1132 aa     Download sequence    Send to blast
MKAPSNGYLP NSGEGERKTI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
ADFIPSYPNL PSKLICMLHN VALHADPETD EVYAQMTLQP VNKYEKEAIL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVAKD LHDNTWAFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKQHL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKVTYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGINDL DPVRWKSSQW RNIQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPRQPGMP DDESDMENAF KRAVPWLGDD FGMKDASSSI FPGFSLVQWM  420
SMQQNNQLTA AQSGCFPSML PFNTLQGNLS TDDPSKLLSF QAPVLSTPSL QLNKPNLPNQ  480
INQLQQSPVS WPQQQQLQQQ QQLQQQQQQQ QQQQQQLQQQ QQQQLQSLLQ VPMNHLQQQR  540
EQQLPEPQNL PLWQQLPQQL GQQPQKQQSS QHATIMNNGV VASNQITNQF SQQPMAYGQL  600
QQQQLLSGGI QSATKNTLPL TSLPQDSQFQ QQIDQQASLL QRQQQQQQTQ LQQSPLQLLQ  660
QNLPQRAPQQ PPATQMLQQN PSEQQLHLQL LQKLQQQQQH QQRLLSTSTP LLLSQLLQQQ  720
NTHQQNQQLP QPLPPISQHQ PQQLGNNAFS TEKLLNSNNL SSSLMQSQKL SMNHPQNTQK  780
SLTITRAPST LTEGDAPSCS TSPSTNNCQV TPPNLLKRNQ QLPATLRGSL IVEPTSNLIQ  840
ELHSKPDTQI KQEFLNVKGP DQLKYKGTIT DQLEASSGTS YCLDPPGNVQ QNLPLSNFCM  900
EGDVQSHPRN SLPFDSNLDG LTPDTMLLTG YDSQKDLQNL LSNYGGAPRE IETELSTADI  960
SSQSFGVPNM PFKPGCSSDV GINDTGVLNN NNGLRANQTP RMRTYTKVQK RGSVGRCIDV  1020
TRYKGYDELR HDLARMFGIE GQLEDPLRTD WKLVYVDHEN DILLVGDDPW DEFVSCVQSI  1080
KILSSAEVQQ MSLDGDLGGN VPIPNQAYSG TDSGNAWRGQ YEDNSAASFN R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1701535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17980.0cotyledon| hypocotyl| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G112600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620925.10.0auxin response factor 19
TrEMBLI1LY860.0I1LY86_SOYBN; Auxin response factor
STRINGGLYMA13G17270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Representative plantOGRP9033914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19