PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G084700.1.p
Common NameGLYMA_13G084700, LOC100805638
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 552aa    MW: 60677.9 Da    PI: 6.1212
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G084700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.12.9e-22117218199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+ltpsd+++ g +++p+ +a+++         ++ +   l++ d +g +W++++iyr++++r+++t+GW++Fv+ ++L +gD+vvF 
  Glyma.13G084700.1.p 117 FAKILTPSDANNGGGFSVPRFCADSCfppldfrADPPVQ--LLSVADIHGVEWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFV 204
                          89*********************999*****97556555..7************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++s++   v+++r+
  Glyma.13G084700.1.p 205 --KDSDGIVSVGIRRA 218
                          ..67899889999986 PP
2Auxin_resp73.75e-25252330183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa++a+ + +FevvY+Pr++ ++Fvv++e ve+++k+ +  GmR+k+++etedss+ ++ +Gtv++  ++     +n +Wr+L+
  Glyma.13G084700.1.p 252 AAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCAWVGGMRVKISMETEDSSRMTWyQGTVSSACAS-----ENGPWRMLQ 330
                          688999*****************************************************9*****99984.....467777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-29109222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-34115220IPR015300DNA-binding pseudobarrel domain
CDDcd100172.65E-19116209No hitNo description
PfamPF023622.2E-20117218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294117219IPR003340B3 DNA binding domain
SMARTSM010197.2E-18117219IPR003340B3 DNA binding domain
PfamPF065071.0E-21252330IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSPPQPSRVD PKIWRACAGA AVQIPKLHSR VYYFPQGHME HASPSHYLSP LIRSLPFVPC  60
HVSSLDFLAD PFSDEVFAKF LLTPLSQSQQ QPFQNDTKEA RNDDDDEDRE NNGVVSFAKI  120
LTPSDANNGG GFSVPRFCAD SCFPPLDFRA DPPVQLLSVA DIHGVEWRFR HIYRGTPRRH  180
LFTTGWSKFV NHKKLVAGDT VVFVKDSDGI VSVGIRRAAR FAAAIETPPP AEREGFSRST  240
TGRVTAEAVA AAAESAARNA PFEVVYYPRT GFADFVVSAE VVEESMKCAW VGGMRVKISM  300
ETEDSSRMTW YQGTVSSACA SENGPWRMLQ VNWDEPEVLQ NAKQVSPWQV ELVSPPFALH  360
TVFSPNKRLR ADQGSGLLSN REQDPFFPMP GFSNSAMGHM TGFPNSTVGQ MDKPLLSYES  420
FPAGMQGARH DLYSPLSFSN FLNDNSYLYM GSGSFGNNPV QSLGTVTTEL NMSSSQSDDL  480
SPHSQSSFHS FGTEFTGTRN CDTKVGPGSI LLFGKIIQPA ESDLHDADCM ERDGSRGSNK  540
LKTVEACYFS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-641235122353Auxin response factor 1
4ldw_A1e-641235122353Auxin response factor 1
4ldw_B1e-641235122353Auxin response factor 1
4ldy_A8e-651235122353Auxin response factor 1
4ldy_B8e-651235122353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G084700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543780.10.0auxin response factor 17
SwissprotQ84WU61e-161ARFQ_ARATH; Auxin response factor 17
TrEMBLI1LW270.0I1LW27_SOYBN; Auxin response factor
STRINGGLYMA13G02410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-136auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]