PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G081700.1.p
Common NameGLYMA_13G081700, LOC100816317
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 473aa    MW: 51427.4 Da    PI: 4.8619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.32e-98964681373
                 GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                          l +lL+++Aea+ss  +++ la+a+L rl+el+sp++ ++++Rlaa+f  AL++ l++       + ++  t+    +++l+a++l++++
  Glyma.13G081700.1.p  96 LLHLLMAAAEALSSgtESHDLARAILVRLNELVSPTQgTNIERLAAHFSHALHSLLNG-------TASAH-TP---PIDTLTAFQLLQDM 174
                          579**********9445666************8886659*******************.......22222.22...6899********** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...........skeeleetgerLa 166
                          sP++kf+h+taNqaIleav++e+rvHiiD+di++G+QW++L+qaL+s   + p+lRiT++++   g           s+ +++etg+rL+
  Glyma.13G081700.1.p 175 SPYIKFAHFTANQAILEAVAHEKRVHIIDYDITEGAQWASLIQALSSAGPPGPHLRITALSRGGGGggnsssasgqrSTASVQETGRRLT 264
                          ***********************************************999999*******99554477788899999999********** PP

                 GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFl 254
                           fA+++g pf+f+    +  e++++++L++ +gEal+ n++l+l +l       +    ++L+  k+l++++vv+ve+e+ +   ++ F+
  Glyma.13G081700.1.p 265 AFAASVGQPFSFHHSRLDPDETFRPSNLKLVRGEALVFNCMLHLPHLN---FRASGSVGSFLRGAKELNSRLVVLVEEEMGCvaADSGFV 351
                          *************9888899************************9996...333334557*******************99877899*** PP

                 GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                            f+++l++ysa+fdsle+++p ++ +r+ vE+++lg++i+  va    +    +e++ +W e+l++aGF+ vpls  + +qa+lll  +
  Glyma.13G081700.1.p 352 GFFMDSLHHYSAVFDSLEVGFPMQTWARALVEKVFLGPRITGSVARMYGS--GTEEEKVSWGEWLGAAGFRGVPLSFANHCQANLLLGLF 439
                          **********************************************9998..5667779******************************* PP

                 GRAS 345 ksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                          + dgyrvee  ++ lvlgWk+r+L+s+S+W
  Glyma.13G081700.1.p 440 N-DGYRVEELeNNRLVLGWKSRRLLSASVW 468
                          *.******86488999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.65370449IPR005202Transcription factor GRAS
PfamPF035146.8E-9696468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDMLIMDDPD FLDFSDHSIT TTLSSHEDCN KNNNNLWSPL IDWESLNACE NDFQTLIDSV  60
MIDNNDDVLT PEESDQSAAE ESESDSTGGD ERGLRLLHLL MAAAEALSSG TESHDLARAI  120
LVRLNELVSP TQGTNIERLA AHFSHALHSL LNGTASAHTP PIDTLTAFQL LQDMSPYIKF  180
AHFTANQAIL EAVAHEKRVH IIDYDITEGA QWASLIQALS SAGPPGPHLR ITALSRGGGG  240
GGNSSSASGQ RSTASVQETG RRLTAFAASV GQPFSFHHSR LDPDETFRPS NLKLVRGEAL  300
VFNCMLHLPH LNFRASGSVG SFLRGAKELN SRLVVLVEEE MGCVAADSGF VGFFMDSLHH  360
YSAVFDSLEV GFPMQTWARA LVEKVFLGPR ITGSVARMYG SGTEEEKVSW GEWLGAAGFR  420
GVPLSFANHC QANLLLGLFN DGYRVEELEN NRLVLGWKSR RLLSASVWSS NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-509047213382Protein SCARECROW
5b3h_A5e-509047212381Protein SCARECROW
5b3h_D5e-509047212381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G081700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-55AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543792.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLI1LW540.0I1LW54_SOYBN; Uncharacterized protein
STRINGGLYMA13G02840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Representative plantOGRP68391319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-122GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]