PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G066600.1.p | ||||||||
Common Name | GLYMA_13G066600, LOC100815077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 376aa MW: 41134.2 Da PI: 6.6931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 44 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v+ +G+g+W++++++ g++R++k+c++rw +yl Glyma.13G066600.1.p 44 RGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 91 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.4e-14 | 100 | 140 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E++l+++++ G++ W++Ia++++ gRt++++k++w++ Glyma.13G066600.1.p 100 FTPQEEDLIINLHGAIGSR-WSLIAKRLP-GRTDNDVKNYWNT 140 9******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-25 | 35 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.371 | 39 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-30 | 41 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-15 | 43 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 44 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.56E-12 | 47 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 95 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.953 | 96 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 96 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-10 | 100 | 142 | No hit | No description |
Pfam | PF00249 | 4.7E-13 | 100 | 140 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MHIASPLHNS LSPSLAFLLL LCLISSLISK MGRPPCCDKS NVKRGLWTPE EDAKILAYVA 60 NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY LRPDLKHDGF TPQEEDLIIN LHGAIGSRWS 120 LIAKRLPGRT DNDVKNYWNT KLRKKLMKMG IDPVTHKPVS QVLSDLGSIS GLPNTTNQMA 180 FINKDLMMSN MPPTKTEPSD SNKSMVEHTQ EGQVHSWEHH IPYQVIINSE NVQPQVLSEA 240 ASSTSSSSSS NLTQLGSPQS YSCQTPQAQI SPPCSSFDWS EFLHSDSFNW SLNPPSGLMQ 300 SEAELSDNTK SNGHDMQGAA SEGSGSGSGA VACGASMEYQ INKQCEAHSF VDGILDRDSE 360 IRAAFPQLLD ASFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 44 | 146 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G066600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-172 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543842.2 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | A0A0R0GT36 | 0.0 | A0A0R0GT36_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G04920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 4e-85 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G066600.1.p |
Entrez Gene | 100815077 |