PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G052100.1.p
Common NameGLYMA_13G052100, LOC100787971
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27735.8 Da    PI: 9.5682
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G052100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-26959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f  +gkl+eyss
  Glyma.13G052100.1.p  9 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 59
                         78***********************************************96 PP
2K-box91.71.3e-308517312100
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                            + +++ +  kL  ++e L+r++R+++G+dL++L+l+eLq+Le+qL++++k+iR+++n+++ e+i++lqkk ++lqe+n +L+kk++e
  Glyma.13G052100.1.p  85 DSQGNWSLQCFKLTGKVEVLERNLRNFVGQDLDPLNLRELQSLEHQLDTAIKRIRTRQNQVMNESISDLQKKARQLQEQNGTLTKKIKE 173
                          5567999999****************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-30278IPR002100Transcription factor, MADS-box
CDDcd002652.63E-38275No hitNo description
PRINTSPR004047.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2584171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.22387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE  60
SSMENVLERY ERHAHIGQLV GDGDDSQGNW SLQCFKLTGK VEVLERNLRN FVGQDLDPLN  120
LRELQSLEHQ LDTAIKRIRT RQNQVMNESI SDLQKKARQL QEQNGTLTKK IKEKGKPVVE  180
PPHCGPETLG LTFPPELQPQ QRLVPSLTLC ETLQAAPLEE VVEARTVPTA TTHIPPWMLH  240
PFTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19174173MEF2 CHIMERA
6byy_B2e-19174173MEF2 CHIMERA
6byy_C2e-19174173MEF2 CHIMERA
6byy_D2e-19174173MEF2 CHIMERA
6bz1_A2e-19174173MEF2 CHIMERA
6bz1_B2e-19174173MEF2 CHIMERA
6bz1_C2e-19174173MEF2 CHIMERA
6bz1_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.244330.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G052100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593704.10.0truncated transcription factor CAULIFLOWER A
RefseqXP_028196815.10.0truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S77e-83AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A445HBJ31e-180A0A445HBJ3_GLYSO; Agamous-like MADS-box protein AGL8 isoform A
TrEMBLK7LXP91e-180K7LXP9_SOYBN; Uncharacterized protein
STRINGGLYMA13G06811.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-79AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]