PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G050700.1.p
Common NameGLYMA_13G050700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 215aa    MW: 24693.1 Da    PI: 6.0184
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G050700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.93.3e-1690148563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++ rr+ +NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ +++ +++ +e+
  Glyma.13G050700.1.p  90 RKHRRMLSNRESARRSRMRKQKHLDELWSQVVWLRNENHQLIDKLNHVSETHDQVLQEN 148
                          578**************************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.8E-1486150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.56588151IPR004827Basic-leucine zipper domain
PfamPF001705.0E-1490148IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-1290162No hitNo description
SuperFamilySSF579592.32E-1390140No hitNo description
CDDcd147022.24E-1991142No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MQTKEVVSSL SYLLPSNPCS YPPSNNYTSM IQNSIPTFQF QRFSNQIYGC NNSHNTTYQV  60
PDFSPQSSCI SSNSTSDEAD DQNLSLINER KHRRMLSNRE SARRSRMRKQ KHLDELWSQV  120
VWLRNENHQL IDKLNHVSET HDQVLQENSQ LKEEASELRQ MIRDMQIHSP CGGPNSFITP  180
LEDHDVDHVP SAYLRSDDSS NQFNSCNNNM DLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102109RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G050700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358810.0AC235881.2 Glycine max clone GM_WBc0011H22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028197073.11e-157basic leucine zipper 43-like
TrEMBLI1LWX91e-157I1LWX9_SOYBN; Uncharacterized protein
STRINGGLYMA13G06980.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-52basic leucine-zipper 42