PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G006100.1.p
Common NameGLYMA_13G005900, GLYMA_13G006100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 175aa    MW: 19869.6 Da    PI: 8.2729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-14109154247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +rWT eE+ l++++ + +G+g+Wk I+++  k+Rt  q+  + qky
  Glyma.13G006100.1.p 109 KRWTNEEHRLFLEGLAYFGKGDWKNISKHAVKTRTKTQVATHAQKY 154
                          69*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.767104159IPR017930Myb domain
SMARTSM007177.7E-7107157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10109155IPR009057Homeodomain-like
PfamPF002493.4E-11109154IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.2E-14110157IPR006447Myb domain, plants
SuperFamilySSF466894.41E-17110160IPR009057Homeodomain-like
CDDcd001671.42E-8110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLGFDDGDSD SDNEQALFGK YPELQMFKWE NSLIHLPSNL SSLLLPQTPL FHCEREETLR  60
VHPPPFLPLQ ETLDHLSANT APTQDITHLQ QARPANPPPT SSPSPNLCKR WTNEEHRLFL  120
EGLAYFGKGD WKNISKHAVK TRTKTQVATH AQKYFLHIKE KGKGKRKSLF DMAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G006100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198046.11e-107uncharacterized protein LOC114382676
TrEMBLK7LYC01e-126K7LYC0_SOYBN; Uncharacterized protein
STRINGGLYMA13G11174.11e-127(Glycine max)
STRINGGLYMA13G11187.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2019725
Representative plantOGRP1230136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.14e-22MYB_related family protein