PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G005900.1.p

Common Name

GLYMA_13G005900, GLYMA_13G006100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 175aa MW: 19869.6 Da PI: 8.2729

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G005900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4e-14	109	154	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT eE+ l++++ + +G+g+Wk I+++ k+Rt q+ + qky Glyma.13G005900.1.p 109 KRWTNEEHRLFLEGLAYFGKGDWKNISKHAVKTRTKTQVATHAQKY 154 69*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.767	104	159	IPR017930	Myb domain
SMART	SM00717	7.7E-7	107	157	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-10	109	155	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-11	109	154	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.2E-14	110	157	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.41E-17	110	160	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-8	110	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MLGFDDGDSD SDNEQALFGK YPELQMFKWE NSLIHLPSNL SSLLLPQTPL FHCEREETLR 60 VHPPPFLPLQ ETLDHLSANT APTQDITHLQ QARPANPPPT SSPSPNLCKR WTNEEHRLFL 120 EGLAYFGKGD WKNISKHAVK TRTKTQVATH AQKYFLHIKE KGKGKRKSLF DMAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G005900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028198046.1	1e-107	uncharacterized protein LOC114382676
TrEMBL	K7LYC0	1e-126	K7LYC0_SOYBN; Uncharacterized protein
STRING	GLYMA13G11174.1	1e-127	(Glycine max)
STRING	GLYMA13G11187.1	1e-127	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20197	2	5
Representative plant	OGRP12301	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09450.1	4e-22	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G005900.1.p