PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G237300.1.p
Common NameGLYMA_12G237300, LOC100784225
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 705aa    MW: 75819.1 Da    PI: 6.6659
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G237300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07279299526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.12G237300.1.p 279 PCPDFRK-GACRRGDMCEYAHG 299
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.46E-186139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-187151IPR020683Ankyrin repeat-containing domain
CDDcd002042.90E-169153No hitNo description
SMARTSM002481701040IPR002110Ankyrin repeat
PfamPF127965.8E-1019123IPR020683Ankyrin repeat-containing domain
SMARTSM002480.285787IPR002110Ankyrin repeat
PROSITE profilePS5029719.17357164IPR020683Ankyrin repeat-containing domain
PRINTSPR014151.0E-45873IPR002110Ankyrin repeat
SMARTSM002480.00992124IPR002110Ankyrin repeat
PROSITE profilePS5008811.94292127IPR002110Ankyrin repeat
PRINTSPR014151.0E-4111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6274300IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035635309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MKSLTVNTED SFSSLLELAS NNDIEGFKVL LEKDSSSINE VGLWYGRQNG SKQFVLEHRT  60
PLMVAATYGS IDVMKIILLC PEADVNFACG ANKTTALHCA ASGGSANAVD AVKILLSAGA  120
DVNGVDANGN RPIDVIAVPP KLQGAKAVLE ELLSDSASEG SIGEFSVPVS VNTSSLGSPG  180
HSSNGMPYTP SSSPPSPVVA KFTDAAVCSL SEKKEYPIDP SLPDIKNSIY ATDEFRMFSF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKFHYSCVPC PDFRKGACRR GDMCEYAHGV  300
FECWLHPAQY RTRLCKDGTS CNRRVCFFAH TAEELRPLYV STGSAVPSPR SSASAPNVMD  360
MAAAMSLLPG SPSSVSSMSP SHFGQPMSPS ANGMSLSSAW AQPNVSALHL PGSNLQSSRL  420
RSSLSARDMP PDDLNMMSDL DGQQQHPLND LSCYLQPRPG AGSVSRSGRS KILTPSNLED  480
LFSAEISSSP RYSDPAAGSV FSPTHKSAVL NQFQQLQSML SPINTNLLSP KNVEHPLLQA  540
SFGVSPSGRM SPRSVEPISP MSSRISAFAQ REKQQQQQQQ LRSLSSRDLG ANSPASLVGS  600
PANPWSKWGS PNGKADWSVN GDTLGRQMRR SSSFELKNNG EEPDLSWVQS LVKESPPEMI  660
KEKFASPMPT ASADGPNSNS QIESIDHSVL GAWLEQMQLD QLVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.333170.0cotyledon| flower| hypocotyl| leaf| meristem| seed coat| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G237300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311560.0KT031156.1 Glycine max clone HN_CCL_174 C3H-type 1 Zn transcription factor (Glyma13g27280.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540529.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_014620596.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLI1LVD60.0I1LVD6_SOYBN; Uncharacterized protein
STRINGGLYMA12G36600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]